Gene detail

Detail information of GWHGAAZE006367

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006368425.1	0	hypothetical protein POPTR_0001s02710g [Populus trichocarpa]
Swissprot	tr\|Q9FFI5\|NAC86_ARATH	7E-70	NAC domain-containing protein 86 {ECO:0000312\|EMBL:AED92405.1}
trEMBL	tr\|U5GS83\|U5GS83_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:ERP64994.1}
TAIR10	AT4G17980.1	9E-86	NAC domain containing protein 71

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	24281867	24284229	-
GWHAAZE00000002	mRNA	24281867	24284229	-
GWHAAZE00000002	exon	24281867	24281979	-
GWHAAZE00000002	exon	24282282	24282522	-
GWHAAZE00000002	exon	24282608	24282931	-
GWHAAZE00000002	exon	24283244	24283521	-
GWHAAZE00000002	exon	24284073	24284229	-
GWHAAZE00000002	CDS	24284073	24284229	-
GWHAAZE00000002	CDS	24283244	24283521	-
GWHAAZE00000002	CDS	24282608	24282931	-
GWHAAZE00000002	CDS	24282282	24282522	-
GWHAAZE00000002	CDS	24281867	24281979	-

Transcript Sequence
>GWHTAAZE006375 ATGGTTGGGGCTTCATTGCCACCTGGGTTTCGATTCCACCCTACCGATGTGGAATTGGTTGGGTATTACTTAAAGAGGAAAGTGGAAGGACTTGAAATTGAGCTTGAAGTAATTCCGGTTATTGATTTGTACAAATTTGATCCATGGGAGTTGCCTGATAAATCTTTCCTCCCAAAACGCGACATGGAATGGTTTTTTTTCTGTCCCCGTGATCGCAAGTACCCAAACGGATCACGCACGAATCGAGCTACCAAAGCTGGCTACTGGAAAGCCACTGGGAAAGACCGGAAAGTTGTCTGTCAGTCTTCTGTGATGGGGTACCGCAAGACCCTTGTTTTTTATCGTGGTAGAGCTCCTTTGGGTGATCGCACAGACTGGGTAATGCACGAGTATCGCCTTTGTGACGATCTCTCTCATAGGTCACCCAGTTTTCAGGGACCTTTTGCCTTGTGCCGTGTCATTAAGAAGAATGAGCAGACACCAAAGACAAGTGATGTTCTAGTGGAACAGAAATCTAATCATACTGGAAGCAATTCGAGCACCAGGGGTTTCACCTCGAGTAAAATTTCGAATGAGCCCTTGATGATCCCCGATGATATGCAACACCAAGCAAGTTATGTGGGCAGAGAGAGTAATTTTTCAACTCCTACTACTTCACCATATGAGAATACACCTATGATGGAGTATGAACCGGCTCCAATGGGGTCGAATCATTCAAGTCTCTGGGTCTCACCTGACTTTATTCTTGATTCTTCAAAGGAACACCCTCAAGGAAAACATGAAGTCCCGAGTGGATACTTTCCACATTATGAGCTTCCGAGCTCAACGAGTTCATTGCAGCCGTATGATCAATACGAAATCTCTCCCAGTTCTTCAAACTCAAATTTTACAGAGGAACTTGAACGTCAGGAGGATTTAAGTCAATTTGGCTGCATGTCACCATACTCTGAACATGGAAACTACATGGGATTTTATGGAAATGAGCAAATGTCATATGAAGGGTTGGAAGCTTGGAACGAAGCTCCGATATGCAGACAAAGTAGCGGTGATGGGAGTCTTGGAGAATTTAATGGTCTTTGGTCACAAGAAGATAACTATGTTGTTGTGATCTAA

Network for GWHGAAZE006367

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	7	133	3.30E-38

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.990
	SRR3591706	second leaf	1.994
	SRR3591707	mature leaf	0.481
	SRR3591708	Shoot apex	3.418
	SRR3591709	Stem	5.498
	SRR3591710	White floral bud	7.200
	SRR3591711	White flower	2.489
	SRR3591712	Green floral bud	9.735
	SRR3591713	Yellow flower	0.837
SRP173429	SRR8316895	Juvenile bud stage	1.290
	SRR8316896	Juvenile bud stage	1.378
	SRR8316897	Juvenile bud stage	0.408
	SRR8316894	Third green stage	1.865
	SRR8316900	Third green stage	11.216
	SRR8316901	Third green stage	7.425
	SRR8316898	Complete white stage	1.880
	SRR8316899	Complete white stage	5.499
	SRR8316903	Complete white stage	3.642
	SRR8316902	Silver flowering stage	0.433
	SRR8316904	Silver flowering stage	1.130
	SRR8316905	Silver flowering stage	0.556
	SRR8316906	Gold flowering stage	0.290
	SRR8316907	Gold flowering stage	0.689
	SRR8316908	Gold flowering stage	0.440
SRP132670	SRR6706286	Control	3.954
	SRR6706287	Light intensity 50%	3.714
	SRR6706288	Light intensity 20%	3.667
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.828
	CNS0095593	Slightly white alabastrum(diploid) 2	4.267
	CNS0095594	Slightly white alabastrum(diploid) 3	2.124
	CNS0095595	Whole white alabastrum(diploid) 2	4.441
	CNS0095596	Whole white alabastrum(diploid) 3	3.831
	CNS0095597	Whole white alabastrum(diploid) 4	4.650
	CNS0095598	Silvery flower (diploied) 1	1.571
	CNS0095599	Silvery flower (diploied) 2	1.117
	CNS0095600	Silvery flower (diploied) 3	1.869
	CNS0095601	Golden flower (diploid) 1	0.320
	CNS0095602	Golden flower (diploid) 2	0.367
	CNS0095603	Golden flower (diploid) 3	0.223
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.918
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.904
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.895
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.404
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.261
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.376
	CNS0095610	Silvery flower (tetraploid) 1	1.163
	CNS0095611	Silvery flower (tetraploid) 2	0.616
	CNS0095612	Silvery flower (tetraploid) 3	0.934
	CNS0095613	Golden flower (tetraploid) 1	0.151
	CNS0095614	Golden flower (tetraploid) 2	0.446
	CNS0095615	Golden flower (tetraploid) 3	0.323
CRA001975	CRR073297	Stem 1	4.628
	CRR073298	Stem 2	4.954
	CRR073299	Stem 3	4.061
	CRR073300	Leaf 1	13.447
	CRR073301	Leaf 2	10.249
	CRR073302	Leaf 3	9.516
	CRR073303	Juvenile bud 1	12.427
	CRR073304	Juvenile bud 2	4.810
	CRR073305	Juvenile bud 3	8.428
	CRR073306	Third green 1	1.804
	CRR073307	Third green 2	1.114
	CRR073308	Third green 3	1.486
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.664
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.102
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.349
	CRR073316	Gold flowering 2	1.535
	CRR073317	Gold flowering 3	0.926
	CRR073318	Tawny withering 1	10.892
	CRR073319	Tawny withering 2	4.071
	CRR073320	Tawny withering 3	9.504