Gene detail

Detail information of GWHGAAZE006361

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002281131.1	1.35447E-90	PREDICTED: ferredoxin [Vitis vinifera]
Swissprot	tr\|P81372\|FERA_ALOMA	3E-12	Ferredoxin-A
trEMBL	tr\|D7TTZ5\|D7TTZ5_VITVI	5E-91	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI33910.3}
TAIR10	AT1G32550.1	8E-64	2Fe-2S ferredoxin-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	24219595	24224405	+
GWHAAZE00000002	mRNA	24219595	24224405	+
GWHAAZE00000002	exon	24219595	24219846	+
GWHAAZE00000002	exon	24220133	24220196	+
GWHAAZE00000002	exon	24222164	24222263	+
GWHAAZE00000002	exon	24222915	24223036	+
GWHAAZE00000002	exon	24223312	24223316	+
GWHAAZE00000002	exon	24223690	24223758	+
GWHAAZE00000002	exon	24224093	24224137	+
GWHAAZE00000002	exon	24224361	24224405	+
GWHAAZE00000002	CDS	24219595	24219846	+
GWHAAZE00000002	CDS	24220133	24220196	+
GWHAAZE00000002	CDS	24222164	24222263	+
GWHAAZE00000002	CDS	24222915	24223036	+
GWHAAZE00000002	CDS	24223312	24223316	+
GWHAAZE00000002	CDS	24223690	24223758	+
GWHAAZE00000002	CDS	24224093	24224137	+
GWHAAZE00000002	CDS	24224361	24224405	+

Transcript Sequence
>GWHTAAZE006369 ATGGATATTCGAGCTCCATGTAGCGCCTGTACTTCAATTTCCCTCAAATCAACACCACTTTTCCCTCAATTCCCCTCCCCGAAAGCCACTAATCACCCCTTGAAATTCCCCCGTAAAACTACCACGTCGGAGCTTCAAACGCCGCTAGGACTCACCAATGGAAACGCCAACTACTCTCCCTCGGTTCCAACTCACAAAGTCACCGTTCACGATAGACAACGAGGTGCCGTTTACGAGTTCTCCGTTCCCGAGGACCAGTATATTTTACACACCGCTGAAGATCAGAATATTTCACTCCCGTTCGCTTGCAGGCACGAGTTCACTGGTTTGCTGAGCTTAGGTTCATTTGTGGTACCATGTCATCATTGTAACACCACTGTATTCAACAATTTTCTCAGTCAAGTGGTCAACACTTGGTTTACATTTGCAGGGTGCTGTACTAGTTGTGCTGTTCGCATAAAATCTGGAGAAATTAGACAGCCTGAAGCACTGGGGATATCTGCTGAATTAAAATCTAAGGCATGTTCTTTCCCTTTTGGAAAGGGCTATGCACTTCTTTGTGTGGGCTTCCCTACTTCTGATATTGAAGTTGAGACACAAGATGAGGATGAGGTATATTGGCTTCAATTCGGAAGATATTTTGCCCGAGGACCTATTGAAAGAGATGACTATGCCTTGGAGTTAGCTATGGGCGATGAGTAA

Network for GWHGAAZE006361

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00111.28	Fer2	78	170	1.90E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02639	petF	Photosynthesis	map00195

Gene Ontology

GO term	Ontology	Name
GO:0009055	molecular_function	electron transfer activity
GO:0051536	molecular_function	iron-sulfur cluster binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.046
	SRR3591706	second leaf	59.547
	SRR3591707	mature leaf	35.258
	SRR3591708	Shoot apex	65.397
	SRR3591709	Stem	15.960
	SRR3591710	White floral bud	20.874
	SRR3591711	White flower	24.608
	SRR3591712	Green floral bud	45.684
	SRR3591713	Yellow flower	23.919
SRP173429	SRR8316895	Juvenile bud stage	24.609
	SRR8316896	Juvenile bud stage	34.863
	SRR8316897	Juvenile bud stage	17.239
	SRR8316894	Third green stage	13.433
	SRR8316900	Third green stage	58.115
	SRR8316901	Third green stage	41.285
	SRR8316898	Complete white stage	12.974
	SRR8316899	Complete white stage	45.589
	SRR8316903	Complete white stage	20.550
	SRR8316902	Silver flowering stage	15.630
	SRR8316904	Silver flowering stage	13.452
	SRR8316905	Silver flowering stage	8.668
	SRR8316906	Gold flowering stage	16.416
	SRR8316907	Gold flowering stage	25.775
	SRR8316908	Gold flowering stage	20.070
SRP132670	SRR6706286	Control	53.541
	SRR6706287	Light intensity 50%	56.919
	SRR6706288	Light intensity 20%	62.118
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.788
	CNS0095593	Slightly white alabastrum(diploid) 2	25.659
	CNS0095594	Slightly white alabastrum(diploid) 3	20.693
	CNS0095595	Whole white alabastrum(diploid) 2	22.900
	CNS0095596	Whole white alabastrum(diploid) 3	27.774
	CNS0095597	Whole white alabastrum(diploid) 4	19.210
	CNS0095598	Silvery flower (diploied) 1	21.625
	CNS0095599	Silvery flower (diploied) 2	21.130
	CNS0095600	Silvery flower (diploied) 3	30.104
	CNS0095601	Golden flower (diploid) 1	18.439
	CNS0095602	Golden flower (diploid) 2	23.194
	CNS0095603	Golden flower (diploid) 3	22.598
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.944
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.525
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.656
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.767
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.176
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.473
	CNS0095610	Silvery flower (tetraploid) 1	26.723
	CNS0095611	Silvery flower (tetraploid) 2	31.401
	CNS0095612	Silvery flower (tetraploid) 3	30.489
	CNS0095613	Golden flower (tetraploid) 1	16.685
	CNS0095614	Golden flower (tetraploid) 2	19.616
	CNS0095615	Golden flower (tetraploid) 3	12.838
CRA001975	CRR073297	Stem 1	35.053
	CRR073298	Stem 2	33.419
	CRR073299	Stem 3	46.490
	CRR073300	Leaf 1	34.147
	CRR073301	Leaf 2	41.959
	CRR073302	Leaf 3	46.746
	CRR073303	Juvenile bud 1	51.155
	CRR073304	Juvenile bud 2	47.983
	CRR073305	Juvenile bud 3	44.456
	CRR073306	Third green 1	29.007
	CRR073307	Third green 2	16.863
	CRR073308	Third green 3	20.899
	CRR073309	Second white 1	27.475
	CRR073310	Second white 2	8.376
	CRR073311	Second white 3	9.288
	CRR073312	Silver flowering 1	10.543
	CRR073313	Silver flowering 2	13.024
	CRR073314	Silver flowering 3	12.140
	CRR073315	Gold flowering 1	76.255
	CRR073316	Gold flowering 2	73.141
	CRR073317	Gold flowering 3	62.738
	CRR073318	Tawny withering 1	17.478
	CRR073319	Tawny withering 2	17.520
	CRR073320	Tawny withering 3	16.995