Gene detail

Detail information of GWHGAAZE006358

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_004300247.1	PREDICTED: AP-2 complex subunit mu-like [Fragaria vesca subsp. vesca]
Swissprot	tr\|O23140\|AP2M_ARATH	AP-2 complex subunit mu
trEMBL	tr\|A0A067KDR8\|A0A067KDR8_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP33153.1}
TAIR10	AT5G46630.1	Clathrin adaptor complexes medium subunit family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	24183645	24196683	-
GWHAAZE00000002	mRNA	24183645	24196683	-
GWHAAZE00000002	exon	24196571	24196683	-
GWHAAZE00000002	exon	24194843	24195020	-
GWHAAZE00000002	exon	24192708	24192798	-
GWHAAZE00000002	exon	24192098	24192192	-
GWHAAZE00000002	exon	24191216	24191305	-
GWHAAZE00000002	exon	24191082	24191130	-
GWHAAZE00000002	exon	24190863	24191001	-
GWHAAZE00000002	exon	24188890	24189006	-
GWHAAZE00000002	exon	24187857	24187947	-
GWHAAZE00000002	exon	24187634	24187776	-
GWHAAZE00000002	exon	24186443	24186557	-
GWHAAZE00000002	exon	24184945	24184989	-
GWHAAZE00000002	exon	24184708	24184858	-
GWHAAZE00000002	exon	24183645	24183855	-
GWHAAZE00000002	CDS	24196571	24196683	-
GWHAAZE00000002	CDS	24194843	24195020	-
GWHAAZE00000002	CDS	24192708	24192798	-
GWHAAZE00000002	CDS	24192098	24192192	-
GWHAAZE00000002	CDS	24191216	24191305	-
GWHAAZE00000002	CDS	24191082	24191130	-
GWHAAZE00000002	CDS	24190863	24191001	-
GWHAAZE00000002	CDS	24188890	24189006	-
GWHAAZE00000002	CDS	24187857	24187947	-
GWHAAZE00000002	CDS	24187634	24187776	-
GWHAAZE00000002	CDS	24186443	24186557	-
GWHAAZE00000002	CDS	24184945	24184989	-
GWHAAZE00000002	CDS	24184778	24184858	-
GWHAAZE00000002	three_prime_UTR	24184708	24184777	-
GWHAAZE00000002	three_prime_UTR	24183645	24183855	-

Transcript Sequence
>GWHTAAZE006366 ATGCCGGTCTCGGCTTCGGCTGTATACTTCATGAATCTCCGCGGTGATGTCCTCATCAATCGTAGGTACCGCGACGACGTTGGGTCAGTCATTCCTCTCTCAGTTCCTACTTTGGGAAATATGGTGGATGCCTTCAAAATGCACATAATGCAAACAAAAGAACTCGGTGTGTGTCCTGTGAGGCAGATTGGAGGTTGCTCTTTCTTTTACATGAGAATTAGCAATGTCTACATTGTGGTTGTTGTCAACAGCAATGCTAATGTAGCTTGTGCCTTCAAGTTTGTCGTTGAGGCAGTTTCATTATTCAAATCTTACTTTGGTGGGGCTTTTGATGAGGATGCTATTCGTAATAACTTCGTTTTGATATATGAATTATTGGATGAAATCATGGATTTTGGTTATCCTCAAAATCTTTCTCCGGAAATTTTGAAGCTTTACATAACTCAGGAAGGTGTACGTTCTCCATTTGCATCCAAGGCTACGGATAAACATGCCCCCAATGCTACTTTGCAAGTTACTGGTGCTGTTGGCTGGCGTAGGGAGGGCCTTTTCTATAAAAAGAATGAGGTATTTTTGGATATTGTGGAAAGTGTTAATCTTCTTATGTCTTCAAAAGGTAGTGTACTCAATTGTGATGTAACTGGGAAGATTCTCATGAAGTGCTTTCTTTCTGGAATGCCTGATCTGAAGTTGGGTTTAAATGACAAAATTGGCCTCGAGAAAGAGTCACAACATAAGTCTCGTCCTTCTAAGAGTGGGAAAACTATTGAGCTTGACGATGTTACTTTCCATCAATGCGTAAACTTAACAAGATTTAACTCAGAAAAGACTGTCAGCTTCGTGCCACCAGATGGTGAATTTGAATTGATGAAGTATCGTATCACCGAAGGTGTAAATCTTCCGTTCCGAGTTTTGCCAACTATCAAGGAATTGGGTCGGACACGCATAGAAGTCAATGTTAAGGTAAAGAGTGTATTTGGTGCAAAAATGTTTGCACTTGGAGTTGTGATTAAGATTCCAGTACCAAAACAAACAGCAAAAACAAGTTTCCAAGTGACATCAGGTCGAGCAAAGTACAATGCATCTATGAACTGCTTGATCTGGAAGATAAAAAAAATTCCTGGACAAACTGAACCAACCTTCAGTGCCGAAGTGGAGTTAATTTCCACGATTACAGAAAATAAGTCTTGGACTCGGCCACCGATTCAGATGGAATTCCAGGTTCCAATGTTTACTGCATCTGGGTTACGTGTCCGTTTTCTGAAGGTATGGGAGAAGAGCGGTTACAATACAGTTGAGTGGGTTCGTTACATTACCAAAGCTGGTTCTTACGAGATTAGGTGCTAAAGAAGCCTGGGCAATGTTGCCAAGTGAATTCTTCCAAGGTCCCTGTTAAGCGCTGCTTGAATTATTTGAGAATGGTGAGAAACCCATTTCATGTAATGGAACAGGTCATGGGACTTTTTTTGAAGGTGAGTTAGATTGATGGGTGCGTAAGGGTGATCAATGAAGGCAACCATATTGATGAAATGGCAGATAAGATATTATCTTATCCGTTCAAGTTTGGTGATTTTGAGGAATAAATGAGAAAACGGAGTTGTCTATAGCAGTTTTTAACATTTAGTAAA

Network for GWHGAAZE006358

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00928.22	Adap_comp_sub	177	448	1.40E-87

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11826	AP2M1	Endocytosis	map04144
		Endocrine and other factor-regulated calcium reabsorption	map04961
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0030131	cellular_component	clathrin adaptor complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.533
	SRR3591706	second leaf	0.441
	SRR3591707	mature leaf	0.284
	SRR3591708	Shoot apex	0.824
	SRR3591709	Stem	1.284
	SRR3591710	White floral bud	6.802
	SRR3591711	White flower	2.181
	SRR3591712	Green floral bud	18.498
	SRR3591713	Yellow flower	1.279
SRP173429	SRR8316895	Juvenile bud stage	6.559
	SRR8316896	Juvenile bud stage	11.289
	SRR8316897	Juvenile bud stage	6.121
	SRR8316894	Third green stage	5.051
	SRR8316900	Third green stage	15.528
	SRR8316901	Third green stage	15.488
	SRR8316898	Complete white stage	1.082
	SRR8316899	Complete white stage	5.770
	SRR8316903	Complete white stage	2.033
	SRR8316902	Silver flowering stage	0.249
	SRR8316904	Silver flowering stage	0.922
	SRR8316905	Silver flowering stage	0.290
	SRR8316906	Gold flowering stage	0.579
	SRR8316907	Gold flowering stage	0.247
	SRR8316908	Gold flowering stage	0.730
SRP132670	SRR6706286	Control	5.175
	SRR6706287	Light intensity 50%	4.593
	SRR6706288	Light intensity 20%	4.238
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.063
	CNS0095593	Slightly white alabastrum(diploid) 2	9.749
	CNS0095594	Slightly white alabastrum(diploid) 3	17.962
	CNS0095595	Whole white alabastrum(diploid) 2	17.774
	CNS0095596	Whole white alabastrum(diploid) 3	20.249
	CNS0095597	Whole white alabastrum(diploid) 4	18.744
	CNS0095598	Silvery flower (diploied) 1	6.690
	CNS0095599	Silvery flower (diploied) 2	5.471
	CNS0095600	Silvery flower (diploied) 3	1.530
	CNS0095601	Golden flower (diploid) 1	8.206
	CNS0095602	Golden flower (diploid) 2	2.794
	CNS0095603	Golden flower (diploid) 3	3.211
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.288
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.339
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.291
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.458
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.258
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.767
	CNS0095610	Silvery flower (tetraploid) 1	0.268
	CNS0095611	Silvery flower (tetraploid) 2	1.831
	CNS0095612	Silvery flower (tetraploid) 3	0.911
	CNS0095613	Golden flower (tetraploid) 1	0.355
	CNS0095614	Golden flower (tetraploid) 2	0.335
	CNS0095615	Golden flower (tetraploid) 3	0.688
CRA001975	CRR073297	Stem 1	5.172
	CRR073298	Stem 2	4.791
	CRR073299	Stem 3	2.175
	CRR073300	Leaf 1	4.488
	CRR073301	Leaf 2	4.787
	CRR073302	Leaf 3	2.368
	CRR073303	Juvenile bud 1	3.052
	CRR073304	Juvenile bud 2	1.390
	CRR073305	Juvenile bud 3	0.512
	CRR073306	Third green 1	0.444
	CRR073307	Third green 2	0.734
	CRR073308	Third green 3	0.468
	CRR073309	Second white 1	0.146
	CRR073310	Second white 2	0.008
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.814
	CRR073313	Silver flowering 2	0.066
	CRR073314	Silver flowering 3	0.121
	CRR073315	Gold flowering 1	1.983
	CRR073316	Gold flowering 2	2.399
	CRR073317	Gold flowering 3	0.450
	CRR073318	Tawny withering 1	1.060
	CRR073319	Tawny withering 2	0.808
	CRR073320	Tawny withering 3	0.505