Gene detail

Detail information of GWHGAAZE006337

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006367451.1	0	PREDICTED: inositol-tetrakisphosphate 1-kinase 1-like [Solanum tuberosum]
Swissprot	tr\|Q84Y01\|ITPK1_MAIZE	2E-136	Inositol-tetrakisphosphate 1-kinase 1
trEMBL	tr\|M1BIH6\|M1BIH6_SOLTU	0	Inositol-tetrakisphosphate 1-kinase {ECO:0000256\|PIRNR:PIRNR038186}
TAIR10	AT5G16760.1	4E-104	Inositol 1,3,4-trisphosphate 5/6-kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	23537969	23539457	+
GWHAAZE00000002	mRNA	23537969	23539457	+
GWHAAZE00000002	exon	23537969	23538325	+
GWHAAZE00000002	exon	23538714	23539457	+
GWHAAZE00000002	CDS	23537969	23538325	+
GWHAAZE00000002	CDS	23538714	23539457	+

Transcript Sequence
>GWHTAAZE006345 ATGGCGGAGTCAGCGAGGAAATTCGTAGTAGGCTATGCCCTAGCTCCGAAGAAGCAACGGAGCTTCATTCAGGTGTCGCTGGTGAACCTCGCGAGAGAACGAGGTATCGATCTCATTAAGATCGATTTGGAGAAGCCCTTGGTGGATCAAGGACCGTTCAATTGCGTTCTCCACAAATGTTACGGCGAAAAGTGGAACAAACAATTGGAGGAGTACTTGAAAAAGTACCCTAATTGTCTCATAATCGACTCGCCTGAGGCGATTGAGAGGCTTCGGAACCGTATTTCCATGCTCCAAGTGGTGGAGGAGCTGAGGATTGAGAATAACTCGCCTGAGTCGTTCGGGATTCCGAAGCAGGTGGTGGTTTATGACACCAAATCACTCTTTGATCCGGCTGCTTGGGGTGAGGGTTTGAATTTCCCTGTGATTGCAAAACCGCTGGTTGCTGATGGGAGTGCAAAGTCGCACAAAATGTCACTGGTTTTCAACTCAGATGGGCTGCAGAAGCTCAAACCGCCGATTGTGCTGCAGCAGTTTGTCAATCATGGTGGTGTGATCTTCAAGGTGTATGTTGTTGATGGGTATGTGAAATGTGTTAAGAGGAAGTCTTTGCCGGATGTGACTGAGGAGAAATTGGCGAGTTTGGAAGGGTGCTTGTCGTTTTCGCAGGTTTCTAACATGAACACAAATGTAAAGAATAATGATAATTATTGCAAACTGATGAATTTGGAAGATGCAGAGTTGCCCCCGCAGAGCTTTATCAATGCTATTGCTCGTGGGTTGCAAAAGGCAATGAAACTGCATCTTTTCAATTTTGATGTAATTAGAGACACTAGGATTGGAAATAGGTACCTTGTTGTTGACATTAACTATTTCCCTGGCTATGCTAAGATGCCAAGCTATGAGACTGTTTTGACGGACTTCTTTTGGGATGTACTAAACAAGAAAGAGCTTGAATGGGATTGTAGGATGTTAATTAACTGCGAGAAAGAAGTAAGGAAGTTAGTAGGTAACAATGGTGGTTGTGGTGAGGATGAAGGGGCCCTACCTGTTTCACCTCTTAAGAGGGAAGAAGAAAAGGAGAGCCCCATTCAAGTTTGA

Network for GWHGAAZE006337

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17927.2	Ins134_P3_kin_N	9	88	3.10E-30
PF05770.12	Ins134_P3_kin	111	311	1.10E-80

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00913	ITPK1	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		Phosphatidylinositol signaling system	map04070

Gene Ontology

GO term	Ontology	Name
GO:0032957	biological_process	inositol trisphosphate metabolic process
GO:0000287	molecular_function	magnesium ion binding
GO:0005524	molecular_function	ATP binding
GO:0047325	molecular_function	inositol tetrakisphosphate 1-kinase activity
GO:0052725	molecular_function	inositol-1,3,4-trisphosphate 6-kinase activity
GO:0052726	molecular_function	inositol-1,3,4-trisphosphate 5-kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.934
	SRR3591706	second leaf	4.372
	SRR3591707	mature leaf	3.147
	SRR3591708	Shoot apex	6.290
	SRR3591709	Stem	4.521
	SRR3591710	White floral bud	9.370
	SRR3591711	White flower	5.976
	SRR3591712	Green floral bud	7.138
	SRR3591713	Yellow flower	3.801
SRP173429	SRR8316895	Juvenile bud stage	3.209
	SRR8316896	Juvenile bud stage	3.891
	SRR8316897	Juvenile bud stage	2.297
	SRR8316894	Third green stage	1.558
	SRR8316900	Third green stage	3.666
	SRR8316901	Third green stage	4.700
	SRR8316898	Complete white stage	2.427
	SRR8316899	Complete white stage	12.456
	SRR8316903	Complete white stage	4.125
	SRR8316902	Silver flowering stage	2.165
	SRR8316904	Silver flowering stage	4.228
	SRR8316905	Silver flowering stage	1.882
	SRR8316906	Gold flowering stage	4.774
	SRR8316907	Gold flowering stage	3.350
	SRR8316908	Gold flowering stage	3.575
SRP132670	SRR6706286	Control	4.805
	SRR6706287	Light intensity 50%	4.935
	SRR6706288	Light intensity 20%	5.669
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.263
	CNS0095593	Slightly white alabastrum(diploid) 2	4.398
	CNS0095594	Slightly white alabastrum(diploid) 3	4.889
	CNS0095595	Whole white alabastrum(diploid) 2	3.848
	CNS0095596	Whole white alabastrum(diploid) 3	2.580
	CNS0095597	Whole white alabastrum(diploid) 4	2.970
	CNS0095598	Silvery flower (diploied) 1	5.516
	CNS0095599	Silvery flower (diploied) 2	5.637
	CNS0095600	Silvery flower (diploied) 3	4.720
	CNS0095601	Golden flower (diploid) 1	5.220
	CNS0095602	Golden flower (diploid) 2	5.740
	CNS0095603	Golden flower (diploid) 3	5.853
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.634
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.309
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.573
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.418
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.706
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.725
	CNS0095610	Silvery flower (tetraploid) 1	2.866
	CNS0095611	Silvery flower (tetraploid) 2	4.032
	CNS0095612	Silvery flower (tetraploid) 3	4.162
	CNS0095613	Golden flower (tetraploid) 1	1.417
	CNS0095614	Golden flower (tetraploid) 2	2.240
	CNS0095615	Golden flower (tetraploid) 3	2.323
CRA001975	CRR073297	Stem 1	6.437
	CRR073298	Stem 2	4.476
	CRR073299	Stem 3	5.848
	CRR073300	Leaf 1	4.231
	CRR073301	Leaf 2	5.805
	CRR073302	Leaf 3	4.779
	CRR073303	Juvenile bud 1	2.867
	CRR073304	Juvenile bud 2	2.699
	CRR073305	Juvenile bud 3	4.622
	CRR073306	Third green 1	2.098
	CRR073307	Third green 2	1.703
	CRR073308	Third green 3	2.162
	CRR073309	Second white 1	2.216
	CRR073310	Second white 2	2.290
	CRR073311	Second white 3	2.664
	CRR073312	Silver flowering 1	1.925
	CRR073313	Silver flowering 2	3.269
	CRR073314	Silver flowering 3	2.543
	CRR073315	Gold flowering 1	4.800
	CRR073316	Gold flowering 2	4.755
	CRR073317	Gold flowering 3	3.804
	CRR073318	Tawny withering 1	9.265
	CRR073319	Tawny withering 2	10.511
	CRR073320	Tawny withering 3	4.331