Gene detail

Detail information of GWHGAAZE006300

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_004241982.1	PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Solanum lycopersicum]
Swissprot	tr\|O82175\|SUVH5_ARATH	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5
trEMBL	tr\|K4C6S6\|K4C6S6_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc06g060960.1.1}
TAIR10	AT2G35160.1	SU(VAR)3-9 homolog 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	22858753	22862166	+
GWHAAZE00000002	mRNA	22858753	22862166	+
GWHAAZE00000002	exon	22858753	22862166	+
GWHAAZE00000002	CDS	22858753	22862166	+

Transcript Sequence
>GWHTAAZE006308 ATGGAGTCCTTGTCCAACGGTAATTTATTACCCGATGGGAAATTGAAAAAGCGGTTATTGGAGAACGGCGATTTCCCTTCTTCTTCTAGTGTTCCTCCGCTCAAGTACAAGCACCGGAAGGTCTCGGCTATTAGAGATTTTCCTCCGGGGTGTGGACCTAATGCGCCTCCCCCTGTTAATTCGAGGCCTCAAGAAACCAAGGTGGCACCGGCAGTGGCTACCGATAAGGTTGTAGAGGCGGACTGCACTACAAGTATTGATAATAGCGAAAATGTTGTGGTCGAATCCGAATTTCATGGAGGTGGTAATAATCCTACTCAGCAGGAAATGGCGGATTCGTTGGACCATTTGGTCGAACAGGTGGTGGCTAATGCTGGGATGGTTACTGGGGTTGAATTATTTTCCTCAAATCTAGAGACTAAAGCGGTTGAACTGCCTAAGGATTTGGAAACTAATGGGATGGAATTGACAAGGGAGACGCACGAGAGGAAGAGTTTAGGTGCGCCGGGTAACAAGCCCGTGTTGGAGGTTTGTGATATGGTTAATGAGGAGGTTGACAAATCTTTGTCACAGCCACATTTACCTTCTACTGATGCCGATGTTACGGAGGGGATTCGGCCAAATAATAAGTATCCTCAAAGAAGGGTTTCGGCTATTCGGGACTTCCCTCCTTTTTGTGGAAGGAACGCTTCTGAACCGAGTGAGGAAGACCGCCTAAGGATTGTTTCTGGAAAAAAGTGCTCGGGGGTATTGGGAGAAACATCAAAAGGGATGGTGGGGGCTGGTAGTGAAGTGCCTGAAGGGAATGTTGGAGATGGAAATGAACAGAAGAGTGAAGAGAATGAGATTGTGGCCAAACCAAGGAAAAAGACCCACACAGTTAGGGCTGGTGAGGAAGAACCTGAAGGGAATGTCCTAGACGGTGCACAGAAAAGTGAATCGAAGGATATTGTGCATTCATCAAGGAACAAAAACCACATAGTAAGGGCTGGTGGCGAGGAAGAGGAAGGGCATGTTGTAGATGAACATGTACAGAAAAGTGAATCAAAAGAGATTGTTCCTGCATCAAGGGAAAAGATTTCGACACTACAGGGTAGTGACAAGGAAGAGGAAGAGAATGCTCAAGGTGGGAATCCTTATAGGAGCGAGTCTAAAGAGATTGTGCTTGCATCAAGGGAAACAACCTGCACAGTAAGGGGTGATGGTGGGGAAGGGTACGTCGGACATGGAAATGTGGAGAAGAGTGAATCAAAAGAGATTGTGGTTGTATCAAGGGAAAAGGCTTGCACAGTAAGGGGTAGTGGTGAGGAACAGGAAGGGAATGCCCGAGATAGAAATGTCAAGAAGAGTGAATCAAAGGAGATTGTGCCTGAACGAAATAAAAAGATTCAAAAGAGTAAGAAGGATGTCAAAGGTATGGCAGATACCGTGGGGAAGGAAATTGTAGTCTACTCACCCAAAAAGAGCTTTACTGAAAATCCAAGCGACGCTCTCGTTTTGGGATCGGACGTGGACAGGGTGGTTGTGGTAAGTCTACTGGCTGCACCCAATTGTCCATGGAGGCAGGGGAGAGGGGCTTTAGCAAGTCCAGATAGTGTTATGAGCAGAAGCAAAGGAAAGAAAAAGTCTAAACTCGGTACCAAGACAAATTGCAATGAATCAAATCCTTCAATAGTGAAATCAATGAAAGAGAAGGCTTCTGGTAAAACTTCAGGTGAATTGGTCGTCAAGGATGAGGAAAATTATGTTGTCGGTAATGAAGAACAAAACGAAGGTTCTCCTGTACATGAAGATTCACCTGTCATTCTTAAACCAGGAGACTTCAATGTGAGCCTACCGCCTTTTGGTCCCAACAGTTCATCTCAAGGTGATGCCCGTAACAGAGTGAGGGAGGTATTACGTCTTTTTCAAGCTGTTGTTAGGAAGCTATTGCAACGGGAAGAAGCAAAGTCAAGGCGCGGAGAAGAAGCAAGGTCAAAGCAGCCAAGGATCGATCTTTTGGCTGCAAAGATTGTTAGGGACAAAGGAAAAGAAGTTAATACAGGAAAACAAACACTGGGAGATGTACCGGGAGTTGAAATAGGTGACGAGTTTCAATACAGAGTGGAGCTTGCTATTGTTGGAATTCATCGATTATATCAAGGAGGTATAGATTATATAAAGCATGGCAAAGAACTTGTTGCAGCTAGTATTGTTGCTTCAGGGGGTTATGCCGATGAACTTGATAGTGCTGACACTTTAATATACTCTGGCCAAGGAGGAAATCCAACGGGCAAGGATAAGCAACCTGAAGACCAGAAGCTTGAAAGAGGAAACCTAGCCTTGAAGAATAGTATATCGAAAAAGAATCCTGTAAGGGTTGTCCGAGGATCTAAAGAAACAAGAGCCGCAGATTCAGATTCAAAAGGTAAGTTGGTTGCAACCTATGTTTATGATGGTCTCTACACTGTGGAAAGGTATTGGCAAGCTGTGGGTCCACATGGTAAGCTAGTGTTTAAGTTTGAATTAAGGAGAGTTCCAGGCCAACCCGAGCTTGCCTGGAAAGAAGTAAAGAAGTCGAAAAAGTTCAAAATGAGGGAGGGTCTTTGTGTCGATGATATATCGGGTGGGAAAGAGTTATTTCCCATTTGTGCTGTGAACACCATAGACGATGAGACGCCACCATCTTTCACTTACATTACTAGCATGATGTTTCCCAATCACTACTCCCCCATTACCCCTAAAGGTTGTGATTGTACTGGTGGGTGTGTGGATTCTCATAGATGCTCATGTGCGGTCAACAACGGAGGAGAGTTACCCTACAACTATAACGGGGCTATAGTTGAGGCAAAGCCTTTGGTCTACGAATGTGGTCCTTCGTGTAAATGCCCTCCTTCTTGCCATAATAGAGTAGCTCAACATGGAATTAAGATTCAGCTCGAAATCTTCAAAACGGGGTCAAGGGGATGGGGTGTTAGATCTCTAAATTCAATTTCCTCCGGTAGTTTTATATGTGAGTATATTGGAGAGCTTCTAGAAGACAAGGAAGCTGAACAAAGAACCGGTAATGATGAATATTTGTTTGACATTGGGCAAAATTACAGTGATTGTTCCCTCAGGAATGATGCACAATTGAGTTCTAATGAGGTTTCAGAGGATGTTGGATTTACAATTGATGCAGTAGAGTTTGGAAATGTGGGCAGGTTTATTAACCATAGTTGTTCCCCTAATCTTTATGCTCAGAATGTATTATATGACAACGACGACAAGAGGATACCCCACATAATGTTTTTTGCTGCTGAGAATATTCCTCCCTTAACGGAGCTGACTTATCATTACAATTATTCAGTGGATCAGGTTCGTGATTCTAATGGCAATATCAAGAAGAAGAGCTGCTATTGTGGTTCTGCAGAATGTACTGGCAGGCTGTATTAG

Network for GWHGAAZE006300

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02182.18	SAD_SRA	686	842	3.50E-50
PF05033.17	Pre-SET	868	963	2.60E-20
PF00856.29	SET	982	1107	5.20E-21

Protein Sequence

>GWHPAAZE006304
MESLSNGNLLPDGKLKKRLLENGDFPSSSSVPPLKYKHRKVSAIRDFPPGCGPNAPPPVNSRPQETKVAPAVATDKVVEADCTTSIDNSENVVVESEFHGGGNNPTQQEMADSLDHLVEQVVANAGMVTGVELFSSNLETKAVELPKDLETNGMELTRETHERKSLGAPGNKPVLEVCDMVNEEVDKSLSQPHLPSTDADVTEGIRPNNKYPQRRVSAIRDFPPFCGRNASEPSEEDRLRIVSGKKCSGVLGETSKGMVGAGSEVPEGNVGDGNEQKSEENEIVAKPRKKTHTVRAGEEEPEGNVLDGAQKSESKDIVHSSRNKNHIVRAGGEEEEGHVVDEHVQKSESKEIVPASREKISTLQGSDKEEEENAQGGNPYRSESKEIVLASRETTCTVRGDGGEGYVGHGNVEKSESKEIVVVSREKACTVRGSGEEQEGNARDRNVKKSESKEIVPERNKKIQKSKKDVKGMADTVGKEIVVYSPKKSFTENPSDALVLGSDVDRVVVVSLLAAPNCPWRQGRGALASPDSVMSRSKGKKKSKLGTKTNCNESNPSIVKSMKEKASGKTSGELVVKDEENYVVGNEEQNEGSPVHEDSPVILKPGDFNVSLPPFGPNSSSQGDARNRVREVLRLFQAVVRKLLQREEAKSRRGEEARSKQPRIDLLAAKIVRDKGKEVNTGKQTLGDVPGVEIGDEFQYRVELAIVGIHRLYQGGIDYIKHGKELVAASIVASGGYADELDSADTLIYSGQGGNPTGKDKQPEDQKLERGNLALKNSISKKNPVRVVRGSKETRAADSDSKGKLVATYVYDGLYTVERYWQAVGPHGKLVFKFELRRVPGQPELAWKEVKKSKKFKMREGLCVDDISGGKELFPICAVNTIDDETPPSFTYITSMMFPNHYSPITPKGCDCTGGCVDSHRCSCAVNNGGELPYNYNGAIVEAKPLVYECGPSCKCPPSCHNRVAQHGIKIQLEIFKTGSRGWGVRSLNSISSGSFICEYIGELLEDKEAEQRTGNDEYLFDIGQNYSDCSLRNDAQLSSNEVSEDVGFTIDAVEFGNVGRFINHSCSPNLYAQNVLYDNDDKRIPHIMFFAAENIPPLTELTYHYNYSVDQVRDSNGNIKKKSCYCGSAECTGRLY

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0034968	biological_process	histone lysine methylation
GO:0016571	biological_process	histone methylation
GO:0005634	cellular_component	nucleus
GO:0008270	molecular_function	zinc ion binding
GO:0018024	molecular_function	histone-lysine N-methyltransferase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.163
	SRR3591706	second leaf	7.594
	SRR3591707	mature leaf	7.549
	SRR3591708	Shoot apex	9.195
	SRR3591709	Stem	8.822
	SRR3591710	White floral bud	9.579
	SRR3591711	White flower	10.610
	SRR3591712	Green floral bud	9.060
	SRR3591713	Yellow flower	8.168
SRP173429	SRR8316895	Juvenile bud stage	7.581
	SRR8316896	Juvenile bud stage	12.547
	SRR8316897	Juvenile bud stage	5.127
	SRR8316894	Third green stage	5.721
	SRR8316900	Third green stage	13.452
	SRR8316901	Third green stage	13.110
	SRR8316898	Complete white stage	4.067
	SRR8316899	Complete white stage	10.719
	SRR8316903	Complete white stage	9.915
	SRR8316902	Silver flowering stage	4.935
	SRR8316904	Silver flowering stage	9.477
	SRR8316905	Silver flowering stage	4.481
	SRR8316906	Gold flowering stage	10.162
	SRR8316907	Gold flowering stage	11.393
	SRR8316908	Gold flowering stage	11.200
SRP132670	SRR6706286	Control	12.642
	SRR6706287	Light intensity 50%	14.523
	SRR6706288	Light intensity 20%	13.948
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.792
	CNS0095593	Slightly white alabastrum(diploid) 2	6.133
	CNS0095594	Slightly white alabastrum(diploid) 3	5.746
	CNS0095595	Whole white alabastrum(diploid) 2	4.634
	CNS0095596	Whole white alabastrum(diploid) 3	4.727
	CNS0095597	Whole white alabastrum(diploid) 4	4.797
	CNS0095598	Silvery flower (diploied) 1	5.837
	CNS0095599	Silvery flower (diploied) 2	4.625
	CNS0095600	Silvery flower (diploied) 3	12.945
	CNS0095601	Golden flower (diploid) 1	5.669
	CNS0095602	Golden flower (diploid) 2	10.149
	CNS0095603	Golden flower (diploid) 3	10.966
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.118
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.134
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.952
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.548
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.186
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.934
	CNS0095610	Silvery flower (tetraploid) 1	15.820
	CNS0095611	Silvery flower (tetraploid) 2	14.629
	CNS0095612	Silvery flower (tetraploid) 3	12.402
	CNS0095613	Golden flower (tetraploid) 1	6.783
	CNS0095614	Golden flower (tetraploid) 2	13.487
	CNS0095615	Golden flower (tetraploid) 3	8.710
CRA001975	CRR073297	Stem 1	12.268
	CRR073298	Stem 2	13.071
	CRR073299	Stem 3	7.638
	CRR073300	Leaf 1	12.700
	CRR073301	Leaf 2	11.636
	CRR073302	Leaf 3	6.314
	CRR073303	Juvenile bud 1	6.414
	CRR073304	Juvenile bud 2	5.017
	CRR073305	Juvenile bud 3	7.934
	CRR073306	Third green 1	3.043
	CRR073307	Third green 2	2.474
	CRR073308	Third green 3	3.267
	CRR073309	Second white 1	2.789
	CRR073310	Second white 2	3.297
	CRR073311	Second white 3	3.601
	CRR073312	Silver flowering 1	3.171
	CRR073313	Silver flowering 2	2.028
	CRR073314	Silver flowering 3	1.656
	CRR073315	Gold flowering 1	2.016
	CRR073316	Gold flowering 2	3.619
	CRR073317	Gold flowering 3	1.932
	CRR073318	Tawny withering 1	3.716
	CRR073319	Tawny withering 2	3.009
	CRR073320	Tawny withering 3	2.750