Gene detail

Detail information of GWHGAAZE006280

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006477139.1	1.0373E-151	PREDICTED: homeobox-leucine zipper protein HAT4-like [Citrus sinensis]
Swissprot	tr\|A5Y7H8\|HAT4_ARATH	2E-110	Homeobox-leucine zipper protein HAT4
trEMBL	tr\|V4TUC1\|V4TUC1_9ROSI	4E-151	Uncharacterized protein {ECO:0000313\|EMBL:ESR53491.1}
TAIR10	AT4G16780.1	2E-83	homeobox protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	22492475	22494193	+
GWHAAZE00000002	mRNA	22492475	22494193	+
GWHAAZE00000002	exon	22492475	22492646	+
GWHAAZE00000002	exon	22493171	22493481	+
GWHAAZE00000002	exon	22493580	22493659	+
GWHAAZE00000002	exon	22493851	22494193	+
GWHAAZE00000002	CDS	22492475	22492646	+
GWHAAZE00000002	CDS	22493171	22493481	+
GWHAAZE00000002	CDS	22493580	22493659	+
GWHAAZE00000002	CDS	22493851	22494193	+

Transcript Sequence
>GWHTAAZE006288 ATGGTTGAGAAAGAGGATATAGGTTTGAGTCTAAGCTTGACCTTTCCCGACAATCGGAGTTCGCAACACTTGAATCTGATGATGCCTTCGTTCCTCTCGTCTTCTCAGTCTCCATCGCCGTTCAATCTTTCTCACAGAACCTCCTTGAACGACGCCGTTCCTTCTTCATCTGACCGAAACACACAGGCATGTAGAGTGGAGACCAGATCGTTCCTGAAAGGTATAGACGTGAACCGGTTGCCGTCGACGGCCGATATGGAGGAAGAGGCCGGTGTATCGTCGCCGAACAGCACGATCTCTAGCGTGAGCGGAAAGAGGAGCGAGAGAGAGCCAACTGGCGACGATCTGGACATGGAGAGAGCTTGCTCTCGAGGTATGAGCGACGAGGAAGACGGTGATAACTCTCGGAAAAAGCTCCGGTTATCGAAAGATCAGTCGGCGATTCTCGAAGAAAGTTTCAAAGAGCACAACACGCTCAATCCTAAGCAAAAGTTGGCACTGTCAAAACGGCTTGGGCTAAGGCCTCGTCAGGTGGAAGTGTGGTTCCAGAACAGGAGGGCAAGGACCAAGTTGAAACAAACAGAGGTGGATTGTGAGTTCTTGAAGAGATGCTGTGAGAATCTAACGGACGAGAACAGAAGATTACAAAAGGAAGTGCAGGAACTGAGGGCTCTCAAAATGTCCCCACAGTTCTACATGCAAATGACCCCTCCCACCACCCTCACCATGTGCCCTTCATGTGAGCGTGTAGGGGTCCCACCGTCCTCATCATCATCTCCGGCTCTGGCAGCACCATCGCCACCAGCCGACGTCCGGCCCCACCACCACCGGCCACTTCCTTTCAACCCATGGGCAACCGCCATGGTGCCTCACCGGCCGTTTGATGGTATCCGCCCTAGATCATAA

Network for GWHGAAZE006280

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04618.13	HD-ZIP_N	1	110	5.40E-29
PF00046.30	Homeodomain	136	190	6.30E-16
PF02183.19	HALZ	192	226	1.40E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.292
	SRR3591706	second leaf	82.671
	SRR3591707	mature leaf	81.076
	SRR3591708	Shoot apex	42.258
	SRR3591709	Stem	27.246
	SRR3591710	White floral bud	52.756
	SRR3591711	White flower	151.403
	SRR3591712	Green floral bud	15.258
	SRR3591713	Yellow flower	104.875
SRP173429	SRR8316895	Juvenile bud stage	29.694
	SRR8316896	Juvenile bud stage	26.789
	SRR8316897	Juvenile bud stage	11.822
	SRR8316894	Third green stage	5.855
	SRR8316900	Third green stage	8.760
	SRR8316901	Third green stage	12.694
	SRR8316898	Complete white stage	20.397
	SRR8316899	Complete white stage	45.601
	SRR8316903	Complete white stage	35.727
	SRR8316902	Silver flowering stage	39.509
	SRR8316904	Silver flowering stage	40.641
	SRR8316905	Silver flowering stage	20.033
	SRR8316906	Gold flowering stage	43.002
	SRR8316907	Gold flowering stage	58.956
	SRR8316908	Gold flowering stage	65.578
SRP132670	SRR6706286	Control	14.469
	SRR6706287	Light intensity 50%	14.309
	SRR6706288	Light intensity 20%	13.288
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.130
	CNS0095593	Slightly white alabastrum(diploid) 2	20.562
	CNS0095594	Slightly white alabastrum(diploid) 3	27.533
	CNS0095595	Whole white alabastrum(diploid) 2	20.119
	CNS0095596	Whole white alabastrum(diploid) 3	9.603
	CNS0095597	Whole white alabastrum(diploid) 4	15.389
	CNS0095598	Silvery flower (diploied) 1	57.058
	CNS0095599	Silvery flower (diploied) 2	42.439
	CNS0095600	Silvery flower (diploied) 3	50.228
	CNS0095601	Golden flower (diploid) 1	12.903
	CNS0095602	Golden flower (diploid) 2	33.772
	CNS0095603	Golden flower (diploid) 3	34.482
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.517
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.135
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.219
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.383
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.799
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.289
	CNS0095610	Silvery flower (tetraploid) 1	63.084
	CNS0095611	Silvery flower (tetraploid) 2	50.723
	CNS0095612	Silvery flower (tetraploid) 3	52.495
	CNS0095613	Golden flower (tetraploid) 1	71.679
	CNS0095614	Golden flower (tetraploid) 2	62.046
	CNS0095615	Golden flower (tetraploid) 3	34.841
CRA001975	CRR073297	Stem 1	36.332
	CRR073298	Stem 2	30.875
	CRR073299	Stem 3	50.455
	CRR073300	Leaf 1	24.564
	CRR073301	Leaf 2	34.971
	CRR073302	Leaf 3	31.800
	CRR073303	Juvenile bud 1	50.719
	CRR073304	Juvenile bud 2	27.687
	CRR073305	Juvenile bud 3	78.064
	CRR073306	Third green 1	88.615
	CRR073307	Third green 2	170.645
	CRR073308	Third green 3	136.564
	CRR073309	Second white 1	108.639
	CRR073310	Second white 2	68.626
	CRR073311	Second white 3	45.124
	CRR073312	Silver flowering 1	80.536
	CRR073313	Silver flowering 2	67.796
	CRR073314	Silver flowering 3	50.350
	CRR073315	Gold flowering 1	24.548
	CRR073316	Gold flowering 2	45.162
	CRR073317	Gold flowering 3	46.689
	CRR073318	Tawny withering 1	18.217
	CRR073319	Tawny withering 2	27.677
	CRR073320	Tawny withering 3	11.094