Gene detail

Detail information of GWHGAAZE006208

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002266233.1	1.6899E-84	PREDICTED: protein YABBY 4 [Vitis vinifera]
Swissprot	tr\|O22152\|YAB1_ARATH	3E-54	Axial regulator YABBY 1
trEMBL	tr\|D7TN10\|D7TN10_VITVI	6E-85	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI31883.3}
TAIR10	AT2G45190.1	3E-44	Plant-specific transcription factor YABBY family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	21114264	21117775	+
GWHAAZE00000002	mRNA	21114264	21117775	+
GWHAAZE00000002	exon	21114264	21114287	+
GWHAAZE00000002	exon	21114536	21114688	+
GWHAAZE00000002	exon	21115046	21115169	+
GWHAAZE00000002	exon	21116266	21116314	+
GWHAAZE00000002	exon	21116820	21116895	+
GWHAAZE00000002	exon	21117426	21117500	+
GWHAAZE00000002	exon	21117668	21117775	+
GWHAAZE00000002	five_prime_UTR	21114264	21114287	+
GWHAAZE00000002	five_prime_UTR	21114536	21114613	+
GWHAAZE00000002	CDS	21114614	21114688	+
GWHAAZE00000002	CDS	21115046	21115169	+
GWHAAZE00000002	CDS	21116266	21116314	+
GWHAAZE00000002	CDS	21116820	21116895	+
GWHAAZE00000002	CDS	21117426	21117500	+
GWHAAZE00000002	CDS	21117668	21117742	+
GWHAAZE00000002	three_prime_UTR	21117743	21117775	+

Transcript Sequence
>GWHTAAZE006216 ACCATTTGCGACACCGTCCTTGCGGTAAGTGTTCCTTGCACAAGCTTGTTCAAGACTGTAACGGTGCGGTGTGGGCACTGCACAAATCTGCTGCCGGTGAACATGCGAGGGTTGCTTCTGCCTTCAGCTAATCAGATTCACTTGGGTCACTCGTTTTTCTCTCCCCATCCTCTTCTGGAAGAGGTGCCAAGCCCTAACCCTAACTTCCTGATGAACCAGATGAATCCAAACCACGAGTTCTCTCTACCGGCTGCTCGAGGAGGGCTTGATGAGCTTTCAAGGCCCCCAGTGACTAACAGACCTCCGGAAAAGAGGCAAAGAGTCCCCTCCGCGTACAACCGATTCATCAAGGAAGAGATCCAACGCATCAAGGCAGGAAATCCAGATATTAGCCACAGGGAAGCCTTTAGTGCTGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGACTGATGCCTGATCAGACTGTCAAGAAGGCTAACATGCGCCAACAGGATACAGAAGATGTTCTGATGATGAAAGATCAAGGGTTCTTTGCTTCAGCTAACGTTGGTGTCTCTCCTTATTAATATCAATCAACAAGTGCTCGATCGATCTAGATT

Network for GWHGAAZE006208

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04690.14	YABBY	57	119	6.00E-40

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-YABBY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0007275	biological_process	multicellular organism development

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.380
	SRR3591706	second leaf	1.692
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	105.174
	SRR3591709	Stem	0.762
	SRR3591710	White floral bud	11.138
	SRR3591711	White flower	2.123
	SRR3591712	Green floral bud	9.263
	SRR3591713	Yellow flower	0.154
SRP173429	SRR8316895	Juvenile bud stage	5.935
	SRR8316896	Juvenile bud stage	5.086
	SRR8316897	Juvenile bud stage	2.900
	SRR8316894	Third green stage	2.601
	SRR8316900	Third green stage	16.910
	SRR8316901	Third green stage	10.465
	SRR8316898	Complete white stage	5.646
	SRR8316899	Complete white stage	74.671
	SRR8316903	Complete white stage	9.234
	SRR8316902	Silver flowering stage	0.293
	SRR8316904	Silver flowering stage	0.095
	SRR8316905	Silver flowering stage	0.005
	SRR8316906	Gold flowering stage	0.066
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	26.049
	SRR6706287	Light intensity 50%	27.108
	SRR6706288	Light intensity 20%	27.461
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.453
	CNS0095593	Slightly white alabastrum(diploid) 2	12.750
	CNS0095594	Slightly white alabastrum(diploid) 3	6.437
	CNS0095595	Whole white alabastrum(diploid) 2	10.963
	CNS0095596	Whole white alabastrum(diploid) 3	4.453
	CNS0095597	Whole white alabastrum(diploid) 4	12.427
	CNS0095598	Silvery flower (diploied) 1	7.292
	CNS0095599	Silvery flower (diploied) 2	4.926
	CNS0095600	Silvery flower (diploied) 3	1.326
	CNS0095601	Golden flower (diploid) 1	5.816
	CNS0095602	Golden flower (diploid) 2	3.607
	CNS0095603	Golden flower (diploid) 3	4.182
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.027
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.452
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.076
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.353
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.691
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.050
	CNS0095610	Silvery flower (tetraploid) 1	1.554
	CNS0095611	Silvery flower (tetraploid) 2	1.055
	CNS0095612	Silvery flower (tetraploid) 3	0.777
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	1.114
	CNS0095615	Golden flower (tetraploid) 3	0.045
CRA001975	CRR073297	Stem 1	7.720
	CRR073298	Stem 2	6.073
	CRR073299	Stem 3	7.396
	CRR073300	Leaf 1	12.781
	CRR073301	Leaf 2	20.855
	CRR073302	Leaf 3	11.095
	CRR073303	Juvenile bud 1	31.780
	CRR073304	Juvenile bud 2	15.347
	CRR073305	Juvenile bud 3	76.872
	CRR073306	Third green 1	0.266
	CRR073307	Third green 2	0.810
	CRR073308	Third green 3	0.460
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.121
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.075
	CRR073316	Gold flowering 2	0.842
	CRR073317	Gold flowering 3	0.061
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.028
	CRR073320	Tawny withering 3	0.000