Gene detail

Detail information of GWHGAAZE006183

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002277518.1	5.7807E-180	PREDICTED: putative pectinesterase 63 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q84WM7\|PPME1_ARATH	8E-121	Pectinesterase PPME1 (Precursor)
trEMBL	tr\|F6HGM2\|F6HGM2_VITVI	1E-180	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT1G69940.1	3E-99	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	20726128	20728644	+
GWHAAZE00000002	mRNA	20726128	20728644	+
GWHAAZE00000002	exon	20726128	20726721	+
GWHAAZE00000002	exon	20727284	20727490	+
GWHAAZE00000002	exon	20727798	20728033	+
GWHAAZE00000002	exon	20728485	20728644	+
GWHAAZE00000002	CDS	20726128	20726721	+
GWHAAZE00000002	CDS	20727284	20727490	+
GWHAAZE00000002	CDS	20727798	20728033	+
GWHAAZE00000002	CDS	20728485	20728644	+

Transcript Sequence
>GWHTAAZE006191 ATGTCCGGCAGAAAGTCAACGTTCATCTTGCCGACCGCCATCCTCTCTACACTACTATTATTCCACCTCATCCCCGTAGCCACTTCCCAAAATCGCCACGTCACCCCCTCGGACGGTCCGAAAATCACCCAATTTCTTCTGTCAATCCCCGCCGTTTTTTCCCAACAAAATCACCACGTCATCCCCTCGGACAAATCGAAACTCGATGAATGGATCGCCCGTAACATTAAGCAGTACCGACAACGCAAGGTTAAGGCCGGAGTTGCACTTGACCCGCAACTCGCCGCCGCAGAGGAAAACGTCAGGATTATTAAGGTTAGACAAGACGGCGCCGGCGATTTTAAGACGATAACTGACGCCGTTAATAGTGTGCCCGAGGGTAACAGGAATAGGACGGTTATTTGGATTGGCGGCGGCGAGTATTGGGAGAAGATAAAGGTTAATGTTACGAAGCGATTTTTGACGTTTTATGGGTCCGCGAACGACATGCCGAGGTTAATGTACAATGGTACGGCCTTGGAATACGGGACGTTTGATAGTGCCACCGTGGCAGTTGAATCTGATTACTTTATGGCGGCTAATATCGTTTTTGCGAATATAGCGCCAAAGCCAGATGGAATAGGTACAGGGGAACAAGCAGTGGCAATGAGGATATCAGGGGATAAGGCTTCGTTCTACAATTGCAAGTTTTTAGGTTTTCAAGATACCTTATGCGATGATAGAGGCATGCATTTCTTTAAGGATTGTCACATTCAGGGCACCGTGGATTTCATATTTGGCAATGGAAAATCTGTTTATTTGAACACAACGATACAGTCAGTGACAGATAATGTAGGGGTAATAACAGCACATGCGAGGGTGAATGCAAGCGATGAGAGTGGATTCACATTTGTACATTGCAACATAAACGGAACGGGAAGGAATGAGCTAGGGCGTGCTTGGAAGGAGAGACCGCGAGTCATTTTTGCCTACACTTATATGGGTCCTATTATCACGCCCCAAGGCTGGTCTGATTACAACAAACCTGAACGTCAACGGACCGTGTATTATGGAGAGTACAATTGCACGGGGCCAGGGGCCGCACCCTATGGGAGAGTGAAGTACGCAAAGATATTAAGCTACGGAGAAGCAAGACCCTTCTTGAGTATGACCTATATCCATGGTCGAGAATGGCTTCTTCCACCCCCCAATTTGTAA

Network for GWHGAAZE006183

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01095.20	Pectinesterase	105	388	1.90E-66

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.124
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.498
	SRR3591708	Shoot apex	0.197
	SRR3591709	Stem	0.546
	SRR3591710	White floral bud	61.624
	SRR3591711	White flower	2.687
	SRR3591712	Green floral bud	3.445
	SRR3591713	Yellow flower	2.028
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.056
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.015
	SRR8316900	Third green stage	0.211
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.061
	SRR8316899	Complete white stage	0.559
	SRR8316903	Complete white stage	0.249
	SRR8316902	Silver flowering stage	0.553
	SRR8316904	Silver flowering stage	1.338
	SRR8316905	Silver flowering stage	0.374
	SRR8316906	Gold flowering stage	0.240
	SRR8316907	Gold flowering stage	0.276
	SRR8316908	Gold flowering stage	0.248
SRP132670	SRR6706286	Control	1.669
	SRR6706287	Light intensity 50%	2.854
	SRR6706288	Light intensity 20%	0.215
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.270
	CNS0095593	Slightly white alabastrum(diploid) 2	0.104
	CNS0095594	Slightly white alabastrum(diploid) 3	0.340
	CNS0095595	Whole white alabastrum(diploid) 2	0.432
	CNS0095596	Whole white alabastrum(diploid) 3	0.183
	CNS0095597	Whole white alabastrum(diploid) 4	0.501
	CNS0095598	Silvery flower (diploied) 1	3.780
	CNS0095599	Silvery flower (diploied) 2	13.077
	CNS0095600	Silvery flower (diploied) 3	2.905
	CNS0095601	Golden flower (diploid) 1	2.364
	CNS0095602	Golden flower (diploid) 2	2.418
	CNS0095603	Golden flower (diploid) 3	1.732
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.114
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.148
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.279
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.093
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.157
	CNS0095610	Silvery flower (tetraploid) 1	1.818
	CNS0095611	Silvery flower (tetraploid) 2	7.419
	CNS0095612	Silvery flower (tetraploid) 3	16.881
	CNS0095613	Golden flower (tetraploid) 1	2.960
	CNS0095614	Golden flower (tetraploid) 2	0.936
	CNS0095615	Golden flower (tetraploid) 3	6.396
CRA001975	CRR073297	Stem 1	1.032
	CRR073298	Stem 2	0.600
	CRR073299	Stem 3	0.758
	CRR073300	Leaf 1	0.499
	CRR073301	Leaf 2	1.122
	CRR073302	Leaf 3	0.351
	CRR073303	Juvenile bud 1	7.065
	CRR073304	Juvenile bud 2	12.914
	CRR073305	Juvenile bud 3	1.798
	CRR073306	Third green 1	9.917
	CRR073307	Third green 2	12.936
	CRR073308	Third green 3	8.166
	CRR073309	Second white 1	0.123
	CRR073310	Second white 2	1.261
	CRR073311	Second white 3	2.274
	CRR073312	Silver flowering 1	9.534
	CRR073313	Silver flowering 2	7.070
	CRR073314	Silver flowering 3	4.398
	CRR073315	Gold flowering 1	11.033
	CRR073316	Gold flowering 2	2.186
	CRR073317	Gold flowering 3	3.482
	CRR073318	Tawny withering 1	8.347
	CRR073319	Tawny withering 2	8.413
	CRR073320	Tawny withering 3	7.047