Detail information of GWHGAAZE006062


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrEYU29736.12.15637E-96hypothetical protein MIMGU_mgv1a014022mg [Erythranthe guttata]
Swissprottr|Q500W4|PLI2C_ARATH4E-79LIM domain-containing protein PLIM2c {ECO:0000305}
trEMBLtr|A0A022QP51|A0A022QP51_ERYGU8E-97Uncharacterized protein {ECO:0000313|EMBL:EYU29736.1}
TAIR10AT3G61230.11E-63GATA type zinc finger transcription factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1876589818767646-
GWHAAZE00000002mRNA1876589818767646-
GWHAAZE00000002exon1876589818766182-
GWHAAZE00000002exon1876634618766435-
GWHAAZE00000002exon1876662518766647-
GWHAAZE00000002exon1876678618766882-
GWHAAZE00000002exon1876751218767646-
GWHAAZE00000002CDS1876751218767646-
GWHAAZE00000002CDS1876678618766882-
GWHAAZE00000002CDS1876662518766647-
GWHAAZE00000002CDS1876634618766435-
GWHAAZE00000002CDS1876589818766182-
Transcript Sequence

Network for GWHGAAZE006062

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00412.23LIM10642.80E-12
PF00412.23LIM1031589.10E-11
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLIM

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.811
SRR3591706second leaf0.566
SRR3591707mature leaf5.973
SRR3591708Shoot apex1.048
SRR3591709Stem5.207
SRR3591710White floral bud513.974
SRR3591711White flower13.211
SRR3591712Green floral bud601.598
SRR3591713Yellow flower3.637
SRP173429 SRR8316895Juvenile bud stage 2.579
SRR8316896Juvenile bud stage 111.502
SRR8316897Juvenile bud stage 97.412
SRR8316894Third green stage 82.723
SRR8316900Third green stage 288.588
SRR8316901Third green stage 355.023
SRR8316898Complete white stage 0.068
SRR8316899Complete white stage 1.886
SRR8316903Complete white stage 0.143
SRR8316902Silver flowering stage1.712
SRR8316904Silver flowering stage4.715
SRR8316905Silver flowering stage1.228
SRR8316906Gold flowering stage 0.952
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.260
SRP132670SRR6706286Control166.313
SRR6706287Light intensity 50%157.888
SRR6706288Light intensity 20%154.959
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1420.307
CNS0095593Slightly white alabastrum(diploid) 2356.770
CNS0095594Slightly white alabastrum(diploid) 3486.726
CNS0095595Whole white alabastrum(diploid) 2882.144
CNS0095596Whole white alabastrum(diploid) 31037.944
CNS0095597Whole white alabastrum(diploid) 41279.489
CNS0095598Silvery flower (diploied) 16.776
CNS0095599Silvery flower (diploied) 223.467
CNS0095600Silvery flower (diploied) 36.667
CNS0095601Golden flower (diploid) 16.324
CNS0095602Golden flower (diploid) 24.218
CNS0095603Golden flower (diploid) 34.106
CNS0095604Slightly white alabastrum(tetraploid) 1795.093
CNS0095605Slightly white alabastrum(tetraploid) 2930.413
CNS0095606Slightly white alabastrum(tetraploid) 31.014
CNS0095607Whole white alabastrum(tetraploid) 11463.494
CNS0095608Whole white alabastrum(tetraploid) 21568.979
CNS0095609Whole white alabastrum(tetraploid) 3628.494
CNS0095610Silvery flower (tetraploid) 11.831
CNS0095611Silvery flower (tetraploid) 214.847
CNS0095612Silvery flower (tetraploid) 355.321
CNS0095613Golden flower (tetraploid) 13.746
CNS0095614Golden flower (tetraploid) 22.116
CNS0095615Golden flower (tetraploid) 332.302
CRA001975CRR073297Stem 149.672
CRR073298Stem 265.332
CRR073299Stem 324.459
CRR073300Leaf 1332.778
CRR073301Leaf 2224.257
CRR073302Leaf 3100.532
CRR073303Juvenile bud 1190.861
CRR073304Juvenile bud 2133.848
CRR073305Juvenile bud 37.683
CRR073306Third green 175.677
CRR073307Third green 2102.471
CRR073308Third green 380.400
CRR073309Second white 13.277
CRR073310Second white 29.951
CRR073311Second white 316.103
CRR073312Silver flowering 163.777
CRR073313Silver flowering 245.856
CRR073314Silver flowering 337.256
CRR073315Gold flowering 1103.760
CRR073316Gold flowering 219.127
CRR073317Gold flowering 333.362
CRR073318Tawny withering 175.799
CRR073319Tawny withering 291.645
CRR073320Tawny withering 383.370