Detail information of GWHGAAZE006007


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDO76354.10hypothetical protein CISIN_1g019125mg [Citrus sinensis]
Swissprottr|P48488|PP1_MEDSV0Serine/threonine-protein phosphatase PP1
trEMBLtr|A0A067G9T3|A0A067G9T3_CITSI0Serine/threonine-protein phosphatase {ECO:0000256|RuleBase:RU004273}
TAIR10AT4G11240.14E-163Calcineurin-like metallo-phosphoesterase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1774745417756192+
GWHAAZE00000002mRNA1774745417756192+
GWHAAZE00000002exon1774745417747676+
GWHAAZE00000002exon1775212117752680+
GWHAAZE00000002exon1775593517756192+
GWHAAZE00000002CDS1774745417747676+
GWHAAZE00000002CDS1775212117752680+
GWHAAZE00000002CDS1775593517756192+
Transcript Sequence

Network for GWHGAAZE006007

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16891.6STPPase_N21683.00E-20
PF00149.29Metallophos702623.30E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06269PPP1C mRNA surveillance pathway map03015
Hippo signaling pathwaymap04390
cAMP signaling pathwaymap04024
cGMP-PKG signaling pathwaymap04022
Meiosis - yeastmap04113
Oocyte meiosismap04114
Cellular senescencemap04218
Focal adhesionmap04510
Regulation of actin cytoskeletonmap04810
Platelet activationmap04611
Insulin signaling pathwaymap04910
Oxytocin signaling pathwaymap04921
Adrenergic signaling in cardiomyocytesmap04261
Vascular smooth muscle contractionmap04270
Dopaminergic synapsemap04728
Long-term potentiationmap04720
Inflammatory mediator regulation of TRP channelsmap04750

Gene Ontology

GO term OntologyName
GO:0016787molecular_functionhydrolase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf36.737
SRR3591706second leaf22.992
SRR3591707mature leaf23.011
SRR3591708Shoot apex44.302
SRR3591709Stem31.860
SRR3591710White floral bud67.670
SRR3591711White flower78.051
SRR3591712Green floral bud39.872
SRR3591713Yellow flower54.171
SRP173429 SRR8316895Juvenile bud stage 26.944
SRR8316896Juvenile bud stage 34.486
SRR8316897Juvenile bud stage 21.669
SRR8316894Third green stage 13.957
SRR8316900Third green stage 41.065
SRR8316901Third green stage 38.723
SRR8316898Complete white stage 25.379
SRR8316899Complete white stage 49.725
SRR8316903Complete white stage 48.301
SRR8316902Silver flowering stage38.072
SRR8316904Silver flowering stage36.389
SRR8316905Silver flowering stage17.683
SRR8316906Gold flowering stage 52.292
SRR8316907Gold flowering stage 58.390
SRR8316908Gold flowering stage 54.913
SRP132670SRR6706286Control54.665
SRR6706287Light intensity 50%48.503
SRR6706288Light intensity 20%47.130
CNP0000432CNS0095592Slightly white alabastrum(diploid) 133.899
CNS0095593Slightly white alabastrum(diploid) 234.767
CNS0095594Slightly white alabastrum(diploid) 329.791
CNS0095595Whole white alabastrum(diploid) 234.656
CNS0095596Whole white alabastrum(diploid) 332.991
CNS0095597Whole white alabastrum(diploid) 428.145
CNS0095598Silvery flower (diploied) 141.114
CNS0095599Silvery flower (diploied) 238.774
CNS0095600Silvery flower (diploied) 350.285
CNS0095601Golden flower (diploid) 139.183
CNS0095602Golden flower (diploid) 252.506
CNS0095603Golden flower (diploid) 347.384
CNS0095604Slightly white alabastrum(tetraploid) 134.795
CNS0095605Slightly white alabastrum(tetraploid) 230.625
CNS0095606Slightly white alabastrum(tetraploid) 352.629
CNS0095607Whole white alabastrum(tetraploid) 123.244
CNS0095608Whole white alabastrum(tetraploid) 225.215
CNS0095609Whole white alabastrum(tetraploid) 339.018
CNS0095610Silvery flower (tetraploid) 164.411
CNS0095611Silvery flower (tetraploid) 256.041
CNS0095612Silvery flower (tetraploid) 358.515
CNS0095613Golden flower (tetraploid) 141.868
CNS0095614Golden flower (tetraploid) 251.115
CNS0095615Golden flower (tetraploid) 352.538
CRA001975CRR073297Stem 148.699
CRR073298Stem 244.578
CRR073299Stem 345.145
CRR073300Leaf 139.282
CRR073301Leaf 243.362
CRR073302Leaf 338.976
CRR073303Juvenile bud 142.094
CRR073304Juvenile bud 239.797
CRR073305Juvenile bud 345.587
CRR073306Third green 142.764
CRR073307Third green 242.469
CRR073308Third green 339.737
CRR073309Second white 141.600
CRR073310Second white 241.469
CRR073311Second white 339.554
CRR073312Silver flowering 133.861
CRR073313Silver flowering 230.376
CRR073314Silver flowering 333.770
CRR073315Gold flowering 132.382
CRR073316Gold flowering 235.483
CRR073317Gold flowering 324.425
CRR073318Tawny withering 151.061
CRR073319Tawny withering 247.810
CRR073320Tawny withering 351.383