Gene detail

Detail information of GWHGAAZE005983

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002517676.1	0	6-phosphogluconate dehydrogenase, putative [Ricinus communis]
Swissprot	tr\|Q9SH69\|6PGD1_ARATH	0	6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic
trEMBL	tr\|B9RVA7\|B9RVA7_RICCO	0	6-phosphogluconate dehydrogenase, decarboxylating {ECO:0000256\|PIRNR:PIRNR000109, ECO:0000256\|RuleBase:RU000485}
TAIR10	AT1G64190.1	2E-172	6-phosphogluconate dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	17335888	17337020	+
GWHAAZE00000002	mRNA	17335888	17337020	+
GWHAAZE00000002	exon	17335888	17336040	+
GWHAAZE00000002	exon	17336136	17337020	+
GWHAAZE00000002	CDS	17335888	17336040	+
GWHAAZE00000002	CDS	17336136	17337020	+

Transcript Sequence
>GWHTAAZE005991 ATGGCTGAAGCAGAGAACCAGGGTTTGCTCTATTTAGGGATGGGGGTTTCGGGTGGTGAAGAGGGTGCCAGAAATGGGCCCTCTTTGATGCCAGGCGGATCTTACCAGGCTTATAATAATATTAAGGATATTGTTGAGAAAGTTGCTGCGCAGCTTATTTCAGAGGCGTATGATGTCTTAAAAAACGCTGGGGGGTTAAGCAATGAGGAGTTGGCTGAGATTTTTGATAACTGGAATAAAGGCGAGCTTGAGAGTTTCTTGATTGAGATTACGGCTGACATTTTCAAGGTGAAGGATGAGCATGGTGATGGATATTTGGTGGATAAGATTTTGGACAAGACTGGGATGAAAGGTACTGGGAAGTGGACTGTTCAACAAGCGGCGGAGCTCTCTGTGGCGGCTCCGACTATTGCTGCTTCGTTAGATGGCAGGTATTTGAGTGGCCAAAAGGAGGAGCGCCAGTCGGCTGCACAGGTGTATAAGGAGGCAGGGCTTCAAGAGGAGTTTGGGACAGTGAAGAGTGGTATTGATAAGAAGAGGTTAATTGATGACGTGAGGCAAGCTTTGTATGCATCTAAGATTTGTAGTTATGCTCAAGGGATGAATTTGTTGAGGGCAAAGAGTGTTGAGAAGGGGTGGAATTTGAATTTTGGGGAATTGGCTAGAATTTGGAAAGGTGGTTGTATTATTAGGGCGGTGTTTTTGGACCGGATTAAGAAGGCATATCAGCGAAACCCAAATTTGGCTAGCTTGCTGGTGGACCCTGATTTTGCTAGAGAGATGGTGCAGAGGCAAGCGGCGTGGAGGAGAGTGGTGGGTTTAGCCATTTCTGCAGGGATTAGTACCCCGGGAATGAGTGCGAGTCTTAATTACTTCGATACCTACAGGCGTGCTAGGCTTCCTGCAAATCTTGTCCAGGCTCAGAGGGACTTGTTCGGGGCTCATACCTACGAGAGGATCGATCGCCCGGGTTCTTATCATACTGAGTGGACAAAGCTAGCAAGAAAGAGTAACACCCGTGTCGCTGCTCTAAATTGA

Network for GWHGAAZE005983

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03446.16	NAD_binding_2	2	53	7.00E-13
PF00393.20	6PGD	45	330	3.00E-113

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00033	PGD, gnd, gntZ	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Pentose phosphate pathway	map00030
		Glutathione metabolism	map00480

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0006098	biological_process	pentose-phosphate shunt
GO:0050661	molecular_function	NADP binding
GO:0004616	molecular_function	phosphogluconate dehydrogenase (decarboxylating) activity
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	174.299
	SRR3591706	second leaf	137.840
	SRR3591707	mature leaf	91.778
	SRR3591708	Shoot apex	162.776
	SRR3591709	Stem	135.051
	SRR3591710	White floral bud	180.693
	SRR3591711	White flower	231.831
	SRR3591712	Green floral bud	184.565
	SRR3591713	Yellow flower	195.209
SRP173429	SRR8316895	Juvenile bud stage	103.644
	SRR8316896	Juvenile bud stage	145.982
	SRR8316897	Juvenile bud stage	65.175
	SRR8316894	Third green stage	53.455
	SRR8316900	Third green stage	181.407
	SRR8316901	Third green stage	172.628
	SRR8316898	Complete white stage	70.166
	SRR8316899	Complete white stage	185.122
	SRR8316903	Complete white stage	138.106
	SRR8316902	Silver flowering stage	112.531
	SRR8316904	Silver flowering stage	148.733
	SRR8316905	Silver flowering stage	104.288
	SRR8316906	Gold flowering stage	251.095
	SRR8316907	Gold flowering stage	286.708
	SRR8316908	Gold flowering stage	306.457
SRP132670	SRR6706286	Control	255.842
	SRR6706287	Light intensity 50%	250.117
	SRR6706288	Light intensity 20%	251.359
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	207.476
	CNS0095593	Slightly white alabastrum(diploid) 2	207.242
	CNS0095594	Slightly white alabastrum(diploid) 3	203.581
	CNS0095595	Whole white alabastrum(diploid) 2	210.698
	CNS0095596	Whole white alabastrum(diploid) 3	172.313
	CNS0095597	Whole white alabastrum(diploid) 4	196.090
	CNS0095598	Silvery flower (diploied) 1	166.531
	CNS0095599	Silvery flower (diploied) 2	184.919
	CNS0095600	Silvery flower (diploied) 3	260.536
	CNS0095601	Golden flower (diploid) 1	152.760
	CNS0095602	Golden flower (diploid) 2	202.084
	CNS0095603	Golden flower (diploid) 3	204.945
	CNS0095604	Slightly white alabastrum(tetraploid) 1	186.720
	CNS0095605	Slightly white alabastrum(tetraploid) 2	187.529
	CNS0095606	Slightly white alabastrum(tetraploid) 3	302.255
	CNS0095607	Whole white alabastrum(tetraploid) 1	138.298
	CNS0095608	Whole white alabastrum(tetraploid) 2	137.617
	CNS0095609	Whole white alabastrum(tetraploid) 3	234.046
	CNS0095610	Silvery flower (tetraploid) 1	359.151
	CNS0095611	Silvery flower (tetraploid) 2	236.358
	CNS0095612	Silvery flower (tetraploid) 3	243.134
	CNS0095613	Golden flower (tetraploid) 1	259.200
	CNS0095614	Golden flower (tetraploid) 2	321.823
	CNS0095615	Golden flower (tetraploid) 3	191.268
CRA001975	CRR073297	Stem 1	114.915
	CRR073298	Stem 2	139.761
	CRR073299	Stem 3	133.016
	CRR073300	Leaf 1	150.755
	CRR073301	Leaf 2	147.884
	CRR073302	Leaf 3	115.669
	CRR073303	Juvenile bud 1	165.421
	CRR073304	Juvenile bud 2	158.559
	CRR073305	Juvenile bud 3	185.810
	CRR073306	Third green 1	210.758
	CRR073307	Third green 2	169.448
	CRR073308	Third green 3	160.130
	CRR073309	Second white 1	245.756
	CRR073310	Second white 2	141.525
	CRR073311	Second white 3	155.130
	CRR073312	Silver flowering 1	162.415
	CRR073313	Silver flowering 2	191.128
	CRR073314	Silver flowering 3	130.683
	CRR073315	Gold flowering 1	52.057
	CRR073316	Gold flowering 2	51.814
	CRR073317	Gold flowering 3	56.446
	CRR073318	Tawny withering 1	114.265
	CRR073319	Tawny withering 2	84.526
	CRR073320	Tawny withering 3	112.830