Gene detail

Detail information of GWHGAAZE005980

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP12113.1	3.2494E-136	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SWE7\|VATE_CITLI	5E-130	V-type proton ATPase subunit E
trEMBL	tr\|A0A068UWV1\|A0A068UWV1_COFCA	1E-136	Coffea canephora DH200=94 genomic scaffold, scaffold_62 {ECO:0000313\|EMBL:CDP12113.1}
TAIR10	AT4G11150.1	2E-89	vacuolar ATP synthase subunit E1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	17282888	17285446	+
GWHAAZE00000002	mRNA	17282888	17285446	+
GWHAAZE00000002	exon	17282888	17282989	+
GWHAAZE00000002	exon	17283075	17283175	+
GWHAAZE00000002	exon	17284460	17284628	+
GWHAAZE00000002	exon	17284847	17285040	+
GWHAAZE00000002	exon	17285258	17285357	+
GWHAAZE00000002	exon	17285438	17285446	+
GWHAAZE00000002	CDS	17282888	17282989	+
GWHAAZE00000002	CDS	17283075	17283175	+
GWHAAZE00000002	CDS	17284460	17284628	+
GWHAAZE00000002	CDS	17284847	17285040	+
GWHAAZE00000002	CDS	17285258	17285357	+
GWHAAZE00000002	CDS	17285438	17285446	+

Transcript Sequence
>GWHTAAZE005988 ATGAACGACACGGATGTATCCAAGCAGATCCAGCAGATGGTCAGATTCATCCGCCAAGAAGCCGATGAGAAGGCCAACGAGATCTCCGTTTCAGCTGAAGAAGAGTTCAACATCGAGAAGTTACAACTGGTTGAAGCAGAGAAGAAGAAGATCAGACAGGAGTATGAGCGTAAACAAAAGCAAGTTGAAGTTCGAAAGAAAATAGAGTACTCTATGCAGCTCAATGCTTCTCGCATCAAAGTCCTTCAAGCTCAGGATGACTTGGTTAGCACCATGAGGGAGGCTGCATCGAAGGAACTTTTGCACGTGAGCCATCACAATTTAGTTCACCACCATGCCTATAAAGAACTTCTCAAAGATCTCATTGTCCAGAGTTTGCTGAGACTAAAAGAGCCCGCAGTCTTGTTGCGTTGCCGTAAAGAGGACTTACATTTGGTGGATGATGTTTTGCACTCAGCAAAGGAGGAATATGCAGAGAAGGCCAAAGTTCATTCACCTGAGATTATAGTTGATAACATCCACCTTCCTCCGGCTCCTTCCCATCACAATGCTCATGGTCTTTCTTGCTCTGGAGGTGTGGTGATGGCTTCTCGAGACGGGAAAATTGTTTGTGAGAATACCCTTGATGCAAGATTGGATGTTATGTTCCGCAAAAAGCTTCCAGAGTGGCCTTAA

Network for GWHGAAZE005980

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01991.19	vATP-synt_E	16	222	3.70E-65

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02150	ATPeV1E, ATP6E	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		mTOR signaling pathway	map04150
		Phagosome	map04145
		Collecting duct acid secretion	map04966
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:1902600	biological_process	proton transmembrane transport
GO:0033178	cellular_component	proton-transporting two-sector ATPase complex, catalytic domain
GO:0046961	molecular_function	proton-transporting ATPase activity, rotational mechanism

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	350.280
	SRR3591706	second leaf	102.764
	SRR3591707	mature leaf	79.775
	SRR3591708	Shoot apex	191.846
	SRR3591709	Stem	243.520
	SRR3591710	White floral bud	142.549
	SRR3591711	White flower	110.887
	SRR3591712	Green floral bud	214.970
	SRR3591713	Yellow flower	74.928
SRP173429	SRR8316895	Juvenile bud stage	99.555
	SRR8316896	Juvenile bud stage	145.254
	SRR8316897	Juvenile bud stage	84.159
	SRR8316894	Third green stage	61.609
	SRR8316900	Third green stage	193.615
	SRR8316901	Third green stage	181.781
	SRR8316898	Complete white stage	73.731
	SRR8316899	Complete white stage	202.067
	SRR8316903	Complete white stage	104.648
	SRR8316902	Silver flowering stage	44.123
	SRR8316904	Silver flowering stage	59.854
	SRR8316905	Silver flowering stage	34.683
	SRR8316906	Gold flowering stage	63.769
	SRR8316907	Gold flowering stage	66.283
	SRR8316908	Gold flowering stage	77.098
SRP132670	SRR6706286	Control	222.807
	SRR6706287	Light intensity 50%	234.732
	SRR6706288	Light intensity 20%	257.064
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	172.510
	CNS0095593	Slightly white alabastrum(diploid) 2	176.103
	CNS0095594	Slightly white alabastrum(diploid) 3	146.791
	CNS0095595	Whole white alabastrum(diploid) 2	164.457
	CNS0095596	Whole white alabastrum(diploid) 3	168.443
	CNS0095597	Whole white alabastrum(diploid) 4	164.012
	CNS0095598	Silvery flower (diploied) 1	86.593
	CNS0095599	Silvery flower (diploied) 2	111.462
	CNS0095600	Silvery flower (diploied) 3	126.924
	CNS0095601	Golden flower (diploid) 1	80.870
	CNS0095602	Golden flower (diploid) 2	97.676
	CNS0095603	Golden flower (diploid) 3	106.627
	CNS0095604	Slightly white alabastrum(tetraploid) 1	211.918
	CNS0095605	Slightly white alabastrum(tetraploid) 2	184.325
	CNS0095606	Slightly white alabastrum(tetraploid) 3	256.219
	CNS0095607	Whole white alabastrum(tetraploid) 1	139.472
	CNS0095608	Whole white alabastrum(tetraploid) 2	150.244
	CNS0095609	Whole white alabastrum(tetraploid) 3	233.084
	CNS0095610	Silvery flower (tetraploid) 1	142.609
	CNS0095611	Silvery flower (tetraploid) 2	143.814
	CNS0095612	Silvery flower (tetraploid) 3	185.809
	CNS0095613	Golden flower (tetraploid) 1	88.635
	CNS0095614	Golden flower (tetraploid) 2	107.375
	CNS0095615	Golden flower (tetraploid) 3	39.332
CRA001975	CRR073297	Stem 1	241.394
	CRR073298	Stem 2	237.242
	CRR073299	Stem 3	291.112
	CRR073300	Leaf 1	311.103
	CRR073301	Leaf 2	310.616
	CRR073302	Leaf 3	359.947
	CRR073303	Juvenile bud 1	444.676
	CRR073304	Juvenile bud 2	377.727
	CRR073305	Juvenile bud 3	331.895
	CRR073306	Third green 1	273.643
	CRR073307	Third green 2	314.570
	CRR073308	Third green 3	264.798
	CRR073309	Second white 1	126.028
	CRR073310	Second white 2	94.146
	CRR073311	Second white 3	53.481
	CRR073312	Silver flowering 1	38.294
	CRR073313	Silver flowering 2	45.202
	CRR073314	Silver flowering 3	38.316
	CRR073315	Gold flowering 1	91.753
	CRR073316	Gold flowering 2	94.364
	CRR073317	Gold flowering 3	89.545
	CRR073318	Tawny withering 1	305.269
	CRR073319	Tawny withering 2	195.761
	CRR073320	Tawny withering 3	312.767