Gene detail

Detail information of GWHGAAZE005939

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002509979.1	1.4856E-75	calcineurin B, putative [Ricinus communis]
Swissprot	tr\|Q3HRP0\|CNBL7_ORYSJ	6E-64	Calcineurin B-like protein 7
trEMBL	tr\|B9RCU5\|B9RCU5_RICCO	6E-76	Calcineurin B, putative {ECO:0000313\|EMBL:EEF51366.1}
TAIR10	AT4G26570.1	1E-51	calcineurin B-like 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	16521453	16523201	+
GWHAAZE00000002	mRNA	16521453	16523201	+
GWHAAZE00000002	exon	16521453	16521507	+
GWHAAZE00000002	exon	16521637	16521719	+
GWHAAZE00000002	exon	16521917	16521976	+
GWHAAZE00000002	exon	16522102	16522210	+
GWHAAZE00000002	exon	16522625	16522668	+
GWHAAZE00000002	exon	16522747	16522859	+
GWHAAZE00000002	exon	16522952	16523025	+
GWHAAZE00000002	exon	16523116	16523201	+
GWHAAZE00000002	CDS	16521453	16521507	+
GWHAAZE00000002	CDS	16521637	16521719	+
GWHAAZE00000002	CDS	16521917	16521976	+
GWHAAZE00000002	CDS	16522102	16522210	+
GWHAAZE00000002	CDS	16522625	16522668	+
GWHAAZE00000002	CDS	16522747	16522859	+
GWHAAZE00000002	CDS	16522952	16523025	+
GWHAAZE00000002	CDS	16523116	16523201	+

Transcript Sequence
>GWHTAAZE005947 ATGAAGCATCGGCCCGCATACGGAGACCCAGCTTTGCTTGAGGATCAAACTTATTTTAATGTGAAAGATGTCAGAGCATTGTATGAGCTTTTCAAGAAATTAAGCAGTTCTTTAGTAGATGATGGTTTTATCAGCAAAGAAGAGTTTCAGCTTGGTTTGTTTAGGAATAGCAAGAAGAGGTCTCTGTTTGCAGATAGGATCTTCTCCTTGTTTGACTACAACAATGATGGAGTGATAGAGTTTTGTGAGTTTGTCCAATCTTTGAGCGTCTTCCACCCCGATGCACCTCAAGCTGACAAAGCTGCCTACTTGATACTCTCCGACAAAATTGTTGAAACCATTATTGATAAGACCTTAGAGGAAGCAGATTTAAAAGGAGACGGAAAGATTGATACAGATGAGTGGAAGGATTTTGTGACTCGTCATACATCCTTGTTAAAGAACATGACAATTCCTTATTTGAAGGATCTTACAACTGCATTTCCTAGTTTTACGCTGAAATCAGAACTTGAAGATGAGATTATAACAAAGAATCATGGTTTCAATGTCGCAACCGATGCTTGCTGTGGTGGTGGTAGGTATAGAGGTTGGATAGCCTGCACACTGAAATGCGCTACCCCATGA

Network for GWHGAAZE005939

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13202.7	EF-hand_5	41	50	0.13
PF13202.7	EF-hand_5	65	86	0.0007
PF13202.7	EF-hand_5	115	139	2.30E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06268	PPP3R, CNB	MAPK signaling pathway	map04010
		Wnt signaling pathway	map04310
		VEGF signaling pathway	map04370
		Calcium signaling pathway	map04020
		cGMP-PKG signaling pathway	map04022
		Oocyte meiosis	map04114
		Cellular senescence	map04218
		C-type lectin receptor signaling pathway	map04625
		Natural killer cell mediated cytotoxicity	map04650
		T cell receptor signaling pathway	map04660
		Th1 and Th2 cell differentiation	map04658
		Th17 cell differentiation	map04659
		B cell receptor signaling pathway	map04662
		Glucagon signaling pathway	map04922
		Oxytocin signaling pathway	map04921
		Renin secretion	map04924
		Glutamatergic synapse	map04724
		Long-term potentiation	map04720
		Axon guidance	map04360
		Osteoclast differentiation	map04380

Gene Ontology

GO term	Ontology	Name
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.243
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.566
	SRR3591709	Stem	3.023
	SRR3591710	White floral bud	0.106
	SRR3591711	White flower	0.062
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.396
	SRR8316896	Juvenile bud stage	0.343
	SRR8316897	Juvenile bud stage	0.779
	SRR8316894	Third green stage	0.422
	SRR8316900	Third green stage	0.170
	SRR8316901	Third green stage	0.686
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.110
	SRR8316903	Complete white stage	0.011
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.304
SRP132670	SRR6706286	Control	0.144
	SRR6706287	Light intensity 50%	0.519
	SRR6706288	Light intensity 20%	0.192
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.286
	CNS0095593	Slightly white alabastrum(diploid) 2	1.717
	CNS0095594	Slightly white alabastrum(diploid) 3	1.317
	CNS0095595	Whole white alabastrum(diploid) 2	1.721
	CNS0095596	Whole white alabastrum(diploid) 3	0.799
	CNS0095597	Whole white alabastrum(diploid) 4	1.459
	CNS0095598	Silvery flower (diploied) 1	0.035
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.484
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.303
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.263
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.262
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.670
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.047
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.244
	CRR073298	Stem 2	0.094
	CRR073299	Stem 3	0.052
	CRR073300	Leaf 1	0.312
	CRR073301	Leaf 2	1.258
	CRR073302	Leaf 3	0.298
	CRR073303	Juvenile bud 1	0.347
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.241
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.360
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.097
	CRR073319	Tawny withering 2	6.297
	CRR073320	Tawny withering 3	1.369