Gene detail

Detail information of GWHGAAZE005914

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009627593.1	0	PREDICTED: beta-amylase 1, chloroplastic-like [Nicotiana tomentosiformis]
Swissprot	tr\|O23553\|BAM3_ARATH	2E-161	Beta-amylase 3, chloroplastic (Precursor)
trEMBL	tr\|M1AVY6\|M1AVY6_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400031627}
TAIR10	AT4G17090.1	5E-124	chloroplast beta-amylase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	16077686	16086433	+
GWHAAZE00000002	mRNA	16077686	16086433	+
GWHAAZE00000002	exon	16077686	16078206	+
GWHAAZE00000002	exon	16084749	16084959	+
GWHAAZE00000002	exon	16085060	16085176	+
GWHAAZE00000002	exon	16085651	16086433	+
GWHAAZE00000002	CDS	16077686	16078206	+
GWHAAZE00000002	CDS	16084749	16084959	+
GWHAAZE00000002	CDS	16085060	16085176	+
GWHAAZE00000002	CDS	16085651	16086433	+

Transcript Sequence
>GWHTAAZE005922 ATGGCGATCGCATCTCCATCCGCTCCCACTTTCTCATCTTCCTCCTTCTCTCGTACTCGTACCGATCCCACTCGCTTCCTCCGATTCTCCGCGTTACCATGTCACCGGACTCAACCTCCCCCACGCCGACTCCTTCTCACTTCTCGTCTCAACTCTCCCGATAACAACGGCAAAGAAGATCTCCAGTACTACGAACTACAACACAAATTCTCCACTCACCGCCATCGCCGGCGGGAGGGCTCGCCGGTGTTCGTTACGCTTCCCCTCGACTCCGTGGACTATTCGTCAGTGAAGATGCGGAAAAGGAAGGCGATGACGGCGTCGTTTATGGCCTTAAAGGCGGCCGGAGTGGAGGGCGTGGTGATGGAGGTGTGGTGGGGGATAGTGGAGAGGGAGGAGCCCAGGGTATACAATTGGCAAGGGTATTTGGATATTGTTTCGTTGGCGGGTAGATTGGGATTGAAGGTTAGGGCTGCAATGGCTTTTCATCAGTGTGGTAAAGGGCCTGCCGATCCTTTCTGGATTCCTCTTCCTCGATGGGTGCTCGAAGAAATAGACAAAGATCCAGATTTAGCATATTCTGACAGGTTCGGAAGAAGGAATAGGGAATACATTTCCCTAGGATGCGACACTCTTCCTGTTCTACATGGACGATCGCCAATCCAAGCCTATGCTGATTTCATGAGGAACTTTAGAGATACCTTTGGACCATTTCTTGGTGGCGTCATAACTGGAATTCAAATTGGCATGGGTCCTGCTGGTGAATTAAGATACCCTGCATGTGCTCCTCATCAGCCAACATTGGCTTCGCACTATCGTGAGGTTGGAGAGTTCCAGTGTTATGATAAGTATATGCTCGCTTCTTTGAATGCTTGTGCCCAAGAAATTGGGATGTGTGAGTGGGCAAGTGGGGCCCCTTCTGGCAGTAGCAGCTTCATGCAGAATCCTGAAAATACTGATTTTTTCAGAAGTTTTGGTTCTTGGGATACACCATATGGAGAGTTCTTCCTTGAATGGTATTCAGGACAACTCCTTTCGCATGGTGAGAGGATATGCAGGGCAGCCGAGACCATTTTTCAGGGCACTGAAGTTAAGCCATATGCAAAAGTGGCAGGGGTCCACTGGCATTACACTACACGATCTCACCCGTCCGAATTAACGGCCGGATATTACAACACGTCGAAAAGGGACGGATACCTACCAATCGCCCGCATGTTTGGTAGGTATGGATTCACCATGTGTTGCAAGTGTTTTGAAATGAAGGATTCATTAGAGCAGCTGACGACCATGTGGAGTAGCCCAGAAGGTTTTCTTAGACAACTTTTATTGTCAGCGAGGGTATGCAGTATACCATTTGATGGTGAAAACTCAGCAACTACTTTGGATGATGATTCTTTTAAACAAGTCCTAAAGATGTCAAAGGAAACACCGTCCTTTTCATTCAACTTTGTTAGAATGGACAAGAACATGTTCGATAGTCGTAATTGGGCCAGTTTTACTCGTTTTGTGAGACAAATGTCGGAGGCCAATAATTTGCAGGCCAAGCTAGATTTTGGGGGAGGTGATATATATGTGTCTTTTTCAGCGTCAGCATCAGTTCCCGGTAATATCGGAGTTGTTCTTGCATGCTAG

Network for GWHGAAZE005914

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01373.18	Glyco_hydro_14	84	502	1.60E-100

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01177	E3.2.1.2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0000272	biological_process	polysaccharide catabolic process
GO:0016161	molecular_function	beta-amylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.724
	SRR3591706	second leaf	18.983
	SRR3591707	mature leaf	25.602
	SRR3591708	Shoot apex	18.761
	SRR3591709	Stem	12.434
	SRR3591710	White floral bud	13.774
	SRR3591711	White flower	15.850
	SRR3591712	Green floral bud	19.146
	SRR3591713	Yellow flower	15.592
SRP173429	SRR8316895	Juvenile bud stage	10.788
	SRR8316896	Juvenile bud stage	17.710
	SRR8316897	Juvenile bud stage	6.866
	SRR8316894	Third green stage	7.018
	SRR8316900	Third green stage	21.859
	SRR8316901	Third green stage	19.274
	SRR8316898	Complete white stage	7.162
	SRR8316899	Complete white stage	24.108
	SRR8316903	Complete white stage	10.370
	SRR8316902	Silver flowering stage	5.497
	SRR8316904	Silver flowering stage	7.263
	SRR8316905	Silver flowering stage	3.441
	SRR8316906	Gold flowering stage	15.369
	SRR8316907	Gold flowering stage	13.905
	SRR8316908	Gold flowering stage	10.241
SRP132670	SRR6706286	Control	19.412
	SRR6706287	Light intensity 50%	19.443
	SRR6706288	Light intensity 20%	20.506
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.850
	CNS0095593	Slightly white alabastrum(diploid) 2	7.431
	CNS0095594	Slightly white alabastrum(diploid) 3	8.438
	CNS0095595	Whole white alabastrum(diploid) 2	7.233
	CNS0095596	Whole white alabastrum(diploid) 3	8.165
	CNS0095597	Whole white alabastrum(diploid) 4	7.411
	CNS0095598	Silvery flower (diploied) 1	10.647
	CNS0095599	Silvery flower (diploied) 2	10.264
	CNS0095600	Silvery flower (diploied) 3	14.618
	CNS0095601	Golden flower (diploid) 1	10.888
	CNS0095602	Golden flower (diploid) 2	16.242
	CNS0095603	Golden flower (diploid) 3	15.520
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.141
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.814
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.766
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.028
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.607
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.870
	CNS0095610	Silvery flower (tetraploid) 1	16.197
	CNS0095611	Silvery flower (tetraploid) 2	19.539
	CNS0095612	Silvery flower (tetraploid) 3	10.937
	CNS0095613	Golden flower (tetraploid) 1	7.513
	CNS0095614	Golden flower (tetraploid) 2	16.599
	CNS0095615	Golden flower (tetraploid) 3	6.960
CRA001975	CRR073297	Stem 1	15.242
	CRR073298	Stem 2	16.212
	CRR073299	Stem 3	16.801
	CRR073300	Leaf 1	18.674
	CRR073301	Leaf 2	14.573
	CRR073302	Leaf 3	14.227
	CRR073303	Juvenile bud 1	14.018
	CRR073304	Juvenile bud 2	13.862
	CRR073305	Juvenile bud 3	17.241
	CRR073306	Third green 1	4.049
	CRR073307	Third green 2	3.155
	CRR073308	Third green 3	5.857
	CRR073309	Second white 1	6.493
	CRR073310	Second white 2	4.678
	CRR073311	Second white 3	5.435
	CRR073312	Silver flowering 1	4.816
	CRR073313	Silver flowering 2	5.417
	CRR073314	Silver flowering 3	3.533
	CRR073315	Gold flowering 1	20.654
	CRR073316	Gold flowering 2	26.670
	CRR073317	Gold flowering 3	20.381
	CRR073318	Tawny withering 1	9.222
	CRR073319	Tawny withering 2	7.003
	CRR073320	Tawny withering 3	11.870