Gene detail

Detail information of GWHGAAZE005858

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011081336.1	2.9157E-138	PREDICTED: B3 domain-containing transcription factor NGA1-like [Sesamum indicum]
Swissprot	tr\|Q8LMR9\|Y3209_ORYSJ	2E-79	B3 domain-containing protein Os03g0120900
trEMBL	tr\|A0A061G9U8\|A0A061G9U8_THECC	2E-121	AP2/B3-like transcriptional factor family protein, putative {ECO:0000313\|EMBL:EOY23814.1}
TAIR10	AT2G46870.1	1E-59	AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	15086838	15088142	-
GWHAAZE00000002	mRNA	15086838	15088142	-
GWHAAZE00000002	exon	15086838	15088142	-
GWHAAZE00000002	CDS	15086838	15088142	-

Transcript Sequence
>GWHTAAZE005866 ATGAATTTTAGGGGAAGTAGTAAGCAAGGAGGATATTACGAAGACGAGCAGTACTTTCCCAGTGGTACTAGTAAGCAAGGTAAGTACTTCCCTCCTTCCACAACTTCCCCTTCCTCTTCTCCTTCCCATCACAAATCCCTCCTTAACAATTACCAACACCGCGCCTGGCTCGAAGACACCAAGTTCGAACCCAGCCGCTCCGACCCCAGCCTCCACTGCTCCCAGCTCGACCTCATGGACACGTCACCTGGTGGTGCTGCTGCTCCTCCTCCTCCTCCTCCTGCTGATGTCGAAGATACTATTCACGCAAACTTACGTGAATCTGCTATAACAGTGGAGAAGGAACACATGTTTGATAAGGTAGTGACGCCCAGTGACGTCGGCAAGTTGAACAGGCTAGTCATCCCCAAACAGCACGCCGAGAGGTACTTTCCGTTAGATTCTTCTACCAACGAGAAGGGTCTGTTGCTGAATTTCGAGGATCGGAACGGGAAGCCCTGGCGGTTCCGGTACTCGTACTGGAATAGCAGCCAGAGCTACGTGATGACAAAAGGGTGGAGCCGATTCGTTAAGGAGAAAAAGCTTGATGCCGGAGATATAGTCTCTTTCCAGCGAGGTGTCGGCGAATCGGCCAAGGACAGGCTTTTCATAGACTGGAGGCGCCGGCCAGATGCTCCGGAATTGAATCCACCGACTCTCTCTCTACCGCACCATTTCTCATTCCACCGACCGATTCACCCTTGGAATCCACTGTTCCTACAGCCTCAGGCTTATCATCGGGACCACTCGCACTTGATGCAGCAAAACTCCACTCAGAATAGATATGGCTACGGTGGCGGCGGTGGCAGTGGCACATATAATTACAACAACGGATCCCTAATTTATTTCAGATCAGCACCTGGGGCGGCAGTGATAGCAGCACCACAACAAAGAGGAGGAGGAGGCAGTAGTGGCGGTGGAGGGGTGGGGTATGAGCCGATGGTGTTTGATTCGGTGCCGGTGGTCCAAGGGAAAGCGGCAGCAAAGAGACTAAGGCTGTTTGGGGTGAACATGGAGTGCCCCATAACGGAGTCTGATGAATGTGACATATTGTCCTCCACAACCATATCCCATCATCATTATAATCCTTCTACTGCTACTAATACTGTGATGGCGCATCAATCTCCTCCTCATCAACATCTCTCTTCTTCATCCATTCCTTACCTCCAATTAAGGCCTTATAATGGCACTCCAATCCAAGCACTGCCTTCTCCGGATTTCTTCGACAAAGGCAAGGCCTCTATGTCCTTAGATTTGGATATCTGA

Network for GWHGAAZE005858

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	118	222	7.00E-29

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.333
	SRR3591706	second leaf	8.876
	SRR3591707	mature leaf	10.808
	SRR3591708	Shoot apex	8.060
	SRR3591709	Stem	1.832
	SRR3591710	White floral bud	22.059
	SRR3591711	White flower	17.525
	SRR3591712	Green floral bud	26.159
	SRR3591713	Yellow flower	13.599
SRP173429	SRR8316895	Juvenile bud stage	10.694
	SRR8316896	Juvenile bud stage	12.381
	SRR8316897	Juvenile bud stage	5.950
	SRR8316894	Third green stage	5.824
	SRR8316900	Third green stage	13.416
	SRR8316901	Third green stage	17.153
	SRR8316898	Complete white stage	4.016
	SRR8316899	Complete white stage	8.401
	SRR8316903	Complete white stage	4.715
	SRR8316902	Silver flowering stage	4.680
	SRR8316904	Silver flowering stage	9.785
	SRR8316905	Silver flowering stage	3.251
	SRR8316906	Gold flowering stage	20.306
	SRR8316907	Gold flowering stage	13.000
	SRR8316908	Gold flowering stage	14.667
SRP132670	SRR6706286	Control	23.831
	SRR6706287	Light intensity 50%	23.749
	SRR6706288	Light intensity 20%	24.576
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.674
	CNS0095593	Slightly white alabastrum(diploid) 2	8.894
	CNS0095594	Slightly white alabastrum(diploid) 3	14.699
	CNS0095595	Whole white alabastrum(diploid) 2	7.690
	CNS0095596	Whole white alabastrum(diploid) 3	13.488
	CNS0095597	Whole white alabastrum(diploid) 4	8.353
	CNS0095598	Silvery flower (diploied) 1	5.309
	CNS0095599	Silvery flower (diploied) 2	5.767
	CNS0095600	Silvery flower (diploied) 3	7.573
	CNS0095601	Golden flower (diploid) 1	7.777
	CNS0095602	Golden flower (diploid) 2	6.533
	CNS0095603	Golden flower (diploid) 3	7.667
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.305
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.927
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.528
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.966
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.953
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.783
	CNS0095610	Silvery flower (tetraploid) 1	20.323
	CNS0095611	Silvery flower (tetraploid) 2	14.169
	CNS0095612	Silvery flower (tetraploid) 3	17.026
	CNS0095613	Golden flower (tetraploid) 1	4.655
	CNS0095614	Golden flower (tetraploid) 2	30.448
	CNS0095615	Golden flower (tetraploid) 3	18.410
CRA001975	CRR073297	Stem 1	35.313
	CRR073298	Stem 2	30.000
	CRR073299	Stem 3	30.621
	CRR073300	Leaf 1	33.160
	CRR073301	Leaf 2	32.041
	CRR073302	Leaf 3	31.064
	CRR073303	Juvenile bud 1	14.277
	CRR073304	Juvenile bud 2	61.364
	CRR073305	Juvenile bud 3	19.021
	CRR073306	Third green 1	28.988
	CRR073307	Third green 2	30.152
	CRR073308	Third green 3	45.756
	CRR073309	Second white 1	6.603
	CRR073310	Second white 2	16.427
	CRR073311	Second white 3	11.933
	CRR073312	Silver flowering 1	10.959
	CRR073313	Silver flowering 2	11.455
	CRR073314	Silver flowering 3	7.762
	CRR073315	Gold flowering 1	12.645
	CRR073316	Gold flowering 2	23.060
	CRR073317	Gold flowering 3	17.310
	CRR073318	Tawny withering 1	9.336
	CRR073319	Tawny withering 2	22.204
	CRR073320	Tawny withering 3	4.701