Gene detail

Detail information of GWHGAAZE005841

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009778632.1	0	PREDICTED: probable cinnamyl alcohol dehydrogenase 1 [Nicotiana sylvestris]
Swissprot	tr\|Q9CAI3\|CADH1_ARATH	0	Probable cinnamyl alcohol dehydrogenase 1
trEMBL	tr\|D7TVV9\|D7TVV9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI34634.3}
TAIR10	AT1G72680.1	4E-151	cinnamyl-alcohol dehydrogenase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	14852304	14854959	+
GWHAAZE00000002	mRNA	14852304	14854959	+
GWHAAZE00000002	exon	14852304	14852392	+
GWHAAZE00000002	exon	14852863	14852976	+
GWHAAZE00000002	exon	14853075	14853305	+
GWHAAZE00000002	exon	14853673	14853958	+
GWHAAZE00000002	exon	14854514	14854664	+
GWHAAZE00000002	exon	14854763	14854959	+
GWHAAZE00000002	CDS	14852304	14852392	+
GWHAAZE00000002	CDS	14852863	14852976	+
GWHAAZE00000002	CDS	14853075	14853305	+
GWHAAZE00000002	CDS	14853673	14853958	+
GWHAAZE00000002	CDS	14854514	14854664	+
GWHAAZE00000002	CDS	14854763	14854959	+

Transcript Sequence
>GWHTAAZE005849 ATGAGTTCACAAGCTGTGAAGGAGGAGTGTCTCGGATGGGCAGCTCGAGATCCATCTGGAGTACTATCACCTTACAAATTCAGTCGTAGGGATGTGAGGAGCGATGATGTATTCTTGAGTATTACACACTGCGGTGTTTGTTACGCCGATGTTGCCTGGACTAGGAATAAATTCGGACACTCGAAGTATCCGTTAGTGCCTGGTCATGAGATTGTTGGAACTGTAAAGGAGGTTGGTTCCAATGTTCAGCGCTTCAAAGTTGGTGACATTGTTGGAGTTGGAACTTATGTCAACTCTTGCAGAGAGTGCGAGTATTGTAATGATGGTTTAGAAGTTCATTGCTCAAAGGGATCGGTCTTCACTTTTGATAGTATTGACGATGATGGTACCGTCACTAAAGGGGGATATTCTAGTTACATTGTTGTTCATGAAAGGTACTGCTATAGAATACCCAAGAATTACCCACCTGCTTTAGCAGCACCTTTGCTTTGTGCGGGAATTACAGTTTACTCCCCCATGATGCGCCATAAAATGAACGAGCCAGGTAAGTCTCTAGGGGTGATTGGGCTAGGTGGTCTTGGTCACTTGGCAGTGAAGTTTGGCAAGGCTTTCGGATTGAATGTAACTGTGTTTAGCACAAGTATATCCAAGAGGGAGGAAGCCCTTAATCTGCTTGGAGCTGACAAATTTGTGGTCTCCTCTGATGAACAGCAAATGACGGCCCTGGCTAAATCCTTAGACTTCATAATAAACACAGCGTCAGGGGATATCCCATTTGATCCATACATGTCACTGTTGAAGACGGCTGGTGTGTTAGTCTTGGTGGGGTTCCCAAGCGAAGTGAAACTCAGTCCAGCAAGCCTTATTATGGGTATGAAAACAATTTCCGGGAGTATAACTGGTGGTACAAAAGAGACACAGGAAATGCTGGACTTTTGTGCTGCCCATAAAATTTACCCCAACATAGAAATTATTCCAATTCAGTATTCAAATGAAGCACTTGAGAGGCTAATAAAGAGGGATGTAAAGTACCGGTTTGTTATTGATATCGAGAACTCCCTGAAGTGA

Network for GWHGAAZE005841

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08240.13	ADH_N	35	149	2.90E-26
PF00107.27	ADH_zinc_N	192	314	8.90E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00083	CAD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0008270	molecular_function	zinc ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.575
	SRR3591706	second leaf	5.332
	SRR3591707	mature leaf	12.710
	SRR3591708	Shoot apex	6.104
	SRR3591709	Stem	17.614
	SRR3591710	White floral bud	18.433
	SRR3591711	White flower	33.700
	SRR3591712	Green floral bud	9.672
	SRR3591713	Yellow flower	57.756
SRP173429	SRR8316895	Juvenile bud stage	35.483
	SRR8316896	Juvenile bud stage	53.485
	SRR8316897	Juvenile bud stage	8.184
	SRR8316894	Third green stage	20.289
	SRR8316900	Third green stage	53.874
	SRR8316901	Third green stage	53.936
	SRR8316898	Complete white stage	33.575
	SRR8316899	Complete white stage	88.364
	SRR8316903	Complete white stage	50.161
	SRR8316902	Silver flowering stage	55.343
	SRR8316904	Silver flowering stage	66.402
	SRR8316905	Silver flowering stage	37.426
	SRR8316906	Gold flowering stage	163.755
	SRR8316907	Gold flowering stage	144.927
	SRR8316908	Gold flowering stage	100.301
SRP132670	SRR6706286	Control	79.541
	SRR6706287	Light intensity 50%	73.891
	SRR6706288	Light intensity 20%	79.358
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	47.236
	CNS0095593	Slightly white alabastrum(diploid) 2	37.676
	CNS0095594	Slightly white alabastrum(diploid) 3	47.741
	CNS0095595	Whole white alabastrum(diploid) 2	42.570
	CNS0095596	Whole white alabastrum(diploid) 3	40.805
	CNS0095597	Whole white alabastrum(diploid) 4	40.416
	CNS0095598	Silvery flower (diploied) 1	82.636
	CNS0095599	Silvery flower (diploied) 2	59.872
	CNS0095600	Silvery flower (diploied) 3	97.727
	CNS0095601	Golden flower (diploid) 1	76.037
	CNS0095602	Golden flower (diploid) 2	134.496
	CNS0095603	Golden flower (diploid) 3	133.838
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.989
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.817
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.759
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.157
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.641
	CNS0095609	Whole white alabastrum(tetraploid) 3	41.445
	CNS0095610	Silvery flower (tetraploid) 1	75.996
	CNS0095611	Silvery flower (tetraploid) 2	61.878
	CNS0095612	Silvery flower (tetraploid) 3	64.633
	CNS0095613	Golden flower (tetraploid) 1	61.891
	CNS0095614	Golden flower (tetraploid) 2	83.845
	CNS0095615	Golden flower (tetraploid) 3	93.309
CRA001975	CRR073297	Stem 1	58.309
	CRR073298	Stem 2	50.323
	CRR073299	Stem 3	50.366
	CRR073300	Leaf 1	63.396
	CRR073301	Leaf 2	56.382
	CRR073302	Leaf 3	60.763
	CRR073303	Juvenile bud 1	85.965
	CRR073304	Juvenile bud 2	81.847
	CRR073305	Juvenile bud 3	81.481
	CRR073306	Third green 1	79.235
	CRR073307	Third green 2	58.639
	CRR073308	Third green 3	63.080
	CRR073309	Second white 1	128.249
	CRR073310	Second white 2	104.299
	CRR073311	Second white 3	91.874
	CRR073312	Silver flowering 1	134.064
	CRR073313	Silver flowering 2	137.045
	CRR073314	Silver flowering 3	122.602
	CRR073315	Gold flowering 1	72.176
	CRR073316	Gold flowering 2	104.595
	CRR073317	Gold flowering 3	101.697
	CRR073318	Tawny withering 1	81.046
	CRR073319	Tawny withering 2	84.836
	CRR073320	Tawny withering 3	73.960