Gene detail

Detail information of GWHGAAZE005832

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AER42647.1	0	GTL1 [Populus tremula x Populus alba]
Swissprot	tr\|Q39117\|TGT2_ARATH	1E-71	Trihelix transcription factor GT-2
trEMBL	tr\|G8G9Q9\|G8G9Q9_POPCN	0	GTL1 {ECO:0000313\|EMBL:AER42647.1}
TAIR10	AT1G76880.1	1E-43	Duplicated homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	14670957	14675010	+
GWHAAZE00000002	mRNA	14670957	14675010	+
GWHAAZE00000002	exon	14670957	14671387	+
GWHAAZE00000002	exon	14672706	14674378	+
GWHAAZE00000002	exon	14674700	14675010	+
GWHAAZE00000002	CDS	14670957	14671387	+
GWHAAZE00000002	CDS	14672706	14674378	+
GWHAAZE00000002	CDS	14674700	14675010	+

Transcript Sequence
>GWHTAAZE005840 ATGCAGCAGCAAGGAGGAAGGTCACAATACGGAGCTTCGCCCTTCGCTGCTGCTGCTGCAACCACTACTGATCCAATATCTCAACAGCAACAGCAGCAGCTTCAGCTTCAGCTTCAGCACCAGCAGCAGAGATTGGGAGATCCGGGGTTGGGGGCAGCGGAAGAGGCGTCGCCTATAAGCAGCAGGCCACCTGCCGGAGCTCATTTATCTTCAGCTGGGAATTTCGACGAACACCTTCTGGTCGCTACAGGTTCCGGTGGATTGCCAGACGACGATGCACTTGGTGGAGATGAAACGGATCGGGGAGGAGGTTCGGGCGGCAACCGGTGGCCCCGGCAAGAGACACTGGCGCTGCTCAAGATCAGGTCTGATATGGATGCAACTTTTCGTGACGCCACGCTCAAGGGACCTCTCTGGGAAGATGTTTCCAGGAAGCTTGCGGAGCTAGGATACAAAAGGAGTGCGAAGAAATGCAAGGAGAAATTCGAAAACGTCCACAAATACTACAAGAGAACCAAAGAAGGCCGAGCCGGTCGCCAAGATGGCAAGAGCTATAGGTTCTTCTCCCAGCTCGAAGCCCTTCACACCACCATTGGATCCTCCTCCTCTTCGGCCCCACCACCTCTCACCACCCCCGCCCCAGCTCCTGCCGCAACCACCATTCAATTTACTGCCCCGGTTCCCGTTCCAATGACTACTCTGCCTGTATCTTCTGTTAGACTACCCACTCCTCTAGCTCAAGTCTCTCACAACGTCGGATTATTATTTAATCCGGATTTAAGTGCTGCAGCGGTTTTGCCCGGAACCGCAGCAGCACCAACCCCTGCTGTAGGGGTTAGCTTCTCATCGGATAGTATGTCATCATCCTCAGGATCCGACGAAATGGATGATGAGGATGACGAGATGGATCTGGAGCCCAACGTGATGGAGGCCGAGCCGAGTAACAGGCTGGACCGCAAGCGGAAAAGGGGTTCGTCCAGGCATAGTGTTAGTAGTAGCCACAAAATGATGGAGTTCTTTGAGGGTCTAATGAAACAAGTAATGCAAAAACAGGAGGCGCTTCAGCAAAGGTTTTTAGAAGCAATTGAGAAACGAGAGCAAGACAGGATGATAAGGGAAGAAGCTTGGAAGAGGCAAGAGATGGCCAGGCTAGCACGCGAACACGACCTCATGGCTCAGGAACGAGCTATTTCTGCTTCGAGGGATGCTGCCATTATTGCCTTTTTGCAAAAAATTACCGGCCAGACTATTCAGTTGCCCACGGCTGTTAACATTCCTGCCGCCCCACCACCGCCACCACCGCCACAAGTTGCGGTTCCGATACCACCTTCACAGCCACCACCACTGCCACAATCGCCAACAGAAATATACCAAAAGCCGCAACAACAGCAACCACCACAACACCATTCGCAACAGCAACAACTTCAGCGTCATCAAAATCCGCAAACTAGTGTTGAAGTTGCGAGAAAGCATCAATCACCGATGTCCACGGAAATAGTTGTTGCCGTTCCGGAACAACAAGTGGCCCCGCAAGAGATGAGTGGGGGCGGGGGATTCGAGGCAGCCTCCTCGAGGTGGCCAAAAGCTGAGGTACTTGCACTAATAAAGTTGAGGAGCGGGCTTGAACCTAGGTACCAAGAGGCCGGGCCGAAGGGACCACTTTGGGAAGAAATCTCTGCAGGGATGCATCGGATGGGTTACAAGAGGAATCCCAAGAGATGCAAAGAAAAATGGGAGAACATCAACAAGTACTTCAAGAAGGTAAAAGAGAGCAACAAGAAGAGACCCGAAGACGCCAAAACATGCCCCTACTTTCATGAACTTGATGCACTATATCGAAAGAAGATACTTGGTGGCACTCCTGGCACTGGTGTTGGTAGTAGCAGTAACCGGCCAGAAGATCAACCGCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAATGTAATGATGGATCCAAAATTTCAAGAAAGGGGCGATATTCCAGCAATCGTGCCATCAACAACACAAACTACTGAACAAGAAAATAAAGATGTTGGAGGCAGTACTAATATGCAGACAAGTAATGGTGATTTGACGGCTACCCTCTTTGGAGAAGGAAGGCTGAACCTTGCTTTTGTATTGAAGCCAGAAGACATCTTGAAGGAGCAGCAGCATCAAAGTCGACAACAGTTGAAAAATAATGATTTTGATAAGATCGAGGAACCAGAGAGTGACATGAATCTTGATCAAGATCATGAAGACGAGTACAATGACGATGATGACGACGACGACGATGACGATGATGGGGATGAAGAAGCTCAAGAGGAAATGAAAATGGCGTACAAGATACAATTCCAAAGACCAAATGCAGGGTCCTCCTCTAATGGAGGAGGAAATGGAACAGCTTCCTTCTTGGCCATGGTTCAGTAA

Network for GWHGAAZE005832

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13837.7	Myb_DNA-bind_4	108	194	6.50E-21
PF13837.7	Myb_DNA-bind_4	524	611	3.30E-22

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	77.797
	SRR3591706	second leaf	65.935
	SRR3591707	mature leaf	47.198
	SRR3591708	Shoot apex	53.697
	SRR3591709	Stem	39.105
	SRR3591710	White floral bud	162.893
	SRR3591711	White flower	61.051
	SRR3591712	Green floral bud	118.655
	SRR3591713	Yellow flower	32.345
SRP173429	SRR8316895	Juvenile bud stage	27.417
	SRR8316896	Juvenile bud stage	32.938
	SRR8316897	Juvenile bud stage	18.476
	SRR8316894	Third green stage	26.232
	SRR8316900	Third green stage	94.667
	SRR8316901	Third green stage	89.819
	SRR8316898	Complete white stage	43.684
	SRR8316899	Complete white stage	121.275
	SRR8316903	Complete white stage	123.083
	SRR8316902	Silver flowering stage	22.146
	SRR8316904	Silver flowering stage	35.201
	SRR8316905	Silver flowering stage	19.500
	SRR8316906	Gold flowering stage	40.643
	SRR8316907	Gold flowering stage	39.759
	SRR8316908	Gold flowering stage	46.608
SRP132670	SRR6706286	Control	140.523
	SRR6706287	Light intensity 50%	156.814
	SRR6706288	Light intensity 20%	152.834
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.016
	CNS0095593	Slightly white alabastrum(diploid) 2	32.095
	CNS0095594	Slightly white alabastrum(diploid) 3	20.651
	CNS0095595	Whole white alabastrum(diploid) 2	25.894
	CNS0095596	Whole white alabastrum(diploid) 3	25.155
	CNS0095597	Whole white alabastrum(diploid) 4	28.914
	CNS0095598	Silvery flower (diploied) 1	25.016
	CNS0095599	Silvery flower (diploied) 2	23.223
	CNS0095600	Silvery flower (diploied) 3	67.872
	CNS0095601	Golden flower (diploid) 1	18.228
	CNS0095602	Golden flower (diploid) 2	39.447
	CNS0095603	Golden flower (diploid) 3	39.273
	CNS0095604	Slightly white alabastrum(tetraploid) 1	42.308
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.067
	CNS0095606	Slightly white alabastrum(tetraploid) 3	134.926
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.396
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.394
	CNS0095609	Whole white alabastrum(tetraploid) 3	86.589
	CNS0095610	Silvery flower (tetraploid) 1	49.269
	CNS0095611	Silvery flower (tetraploid) 2	49.384
	CNS0095612	Silvery flower (tetraploid) 3	95.141
	CNS0095613	Golden flower (tetraploid) 1	23.573
	CNS0095614	Golden flower (tetraploid) 2	38.649
	CNS0095615	Golden flower (tetraploid) 3	27.361
CRA001975	CRR073297	Stem 1	72.485
	CRR073298	Stem 2	74.554
	CRR073299	Stem 3	51.389
	CRR073300	Leaf 1	165.645
	CRR073301	Leaf 2	143.700
	CRR073302	Leaf 3	93.660
	CRR073303	Juvenile bud 1	122.407
	CRR073304	Juvenile bud 2	137.050
	CRR073305	Juvenile bud 3	233.465
	CRR073306	Third green 1	144.966
	CRR073307	Third green 2	101.317
	CRR073308	Third green 3	139.376
	CRR073309	Second white 1	32.611
	CRR073310	Second white 2	36.903
	CRR073311	Second white 3	33.172
	CRR073312	Silver flowering 1	9.484
	CRR073313	Silver flowering 2	10.347
	CRR073314	Silver flowering 3	11.382
	CRR073315	Gold flowering 1	24.270
	CRR073316	Gold flowering 2	40.904
	CRR073317	Gold flowering 3	19.288
	CRR073318	Tawny withering 1	23.292
	CRR073319	Tawny withering 2	20.351
	CRR073320	Tawny withering 3	23.696