Detail information of GWHGAAZE005743


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002277307.25.4589E-140PREDICTED: trihelix transcription factor PTL [Vitis vinifera]
Swissprottr|Q9LZS0|PTL_ARATH3E-103Trihelix transcription factor PTL
trEMBLtr|F6HKI2|F6HKI2_VITVI3E-140Putative uncharacterized protein {ECO:0000313|EMBL:CCB55404.1}
TAIR10AT5G03680.14E-73Duplicated homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1300216513004427-
GWHAAZE00000002mRNA1300216513004427-
GWHAAZE00000002exon1300428213004427-
GWHAAZE00000002exon1300216513003227-
GWHAAZE00000002CDS1300428213004427-
GWHAAZE00000002CDS1300216513003227-
Transcript Sequence

Network for GWHGAAZE005743

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13837.7Myb_DNA-bind_4141004.70E-20
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyTrihelix

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.684
SRR3591706second leaf0.051
SRR3591707mature leaf0.000
SRR3591708Shoot apex3.627
SRR3591709Stem4.933
SRR3591710White floral bud11.827
SRR3591711White flower14.832
SRR3591712Green floral bud4.025
SRR3591713Yellow flower0.884
SRP173429 SRR8316895Juvenile bud stage 6.745
SRR8316896Juvenile bud stage 11.103
SRR8316897Juvenile bud stage 3.343
SRR8316894Third green stage 4.126
SRR8316900Third green stage 6.240
SRR8316901Third green stage 6.087
SRR8316898Complete white stage 1.777
SRR8316899Complete white stage 15.904
SRR8316903Complete white stage 8.860
SRR8316902Silver flowering stage0.669
SRR8316904Silver flowering stage0.744
SRR8316905Silver flowering stage0.103
SRR8316906Gold flowering stage 0.631
SRR8316907Gold flowering stage 0.690
SRR8316908Gold flowering stage 1.676
SRP132670SRR6706286Control9.264
SRR6706287Light intensity 50%9.968
SRR6706288Light intensity 20%8.265
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.820
CNS0095593Slightly white alabastrum(diploid) 213.440
CNS0095594Slightly white alabastrum(diploid) 37.231
CNS0095595Whole white alabastrum(diploid) 212.375
CNS0095596Whole white alabastrum(diploid) 30.897
CNS0095597Whole white alabastrum(diploid) 46.397
CNS0095598Silvery flower (diploied) 148.993
CNS0095599Silvery flower (diploied) 228.168
CNS0095600Silvery flower (diploied) 38.390
CNS0095601Golden flower (diploid) 140.181
CNS0095602Golden flower (diploid) 217.948
CNS0095603Golden flower (diploid) 319.100
CNS0095604Slightly white alabastrum(tetraploid) 19.375
CNS0095605Slightly white alabastrum(tetraploid) 25.380
CNS0095606Slightly white alabastrum(tetraploid) 322.145
CNS0095607Whole white alabastrum(tetraploid) 18.246
CNS0095608Whole white alabastrum(tetraploid) 20.951
CNS0095609Whole white alabastrum(tetraploid) 31.289
CNS0095610Silvery flower (tetraploid) 11.895
CNS0095611Silvery flower (tetraploid) 26.311
CNS0095612Silvery flower (tetraploid) 31.706
CNS0095613Golden flower (tetraploid) 10.101
CNS0095614Golden flower (tetraploid) 20.936
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 16.583
CRR073298Stem 210.851
CRR073299Stem 36.970
CRR073300Leaf 112.301
CRR073301Leaf 215.815
CRR073302Leaf 34.213
CRR073303Juvenile bud 16.795
CRR073304Juvenile bud 22.548
CRR073305Juvenile bud 317.848
CRR073306Third green 11.174
CRR073307Third green 21.221
CRR073308Third green 31.102
CRR073309Second white 10.033
CRR073310Second white 20.000
CRR073311Second white 30.136
CRR073312Silver flowering 10.048
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.140
CRR073318Tawny withering 111.109
CRR073319Tawny withering 25.740
CRR073320Tawny withering 316.049