Gene detail

Detail information of GWHGAAZE005640

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG14606.1	1.4079E-128	Membrin-11 -like protein [Gossypium arboreum]
Swissprot	tr\|Q9SJL6\|MEM11_ARATH	2E-114	Membrin-11
trEMBL	tr\|A0A061F7M2\|A0A061F7M2_THECC	7E-129	Membrin {ECO:0000256\|PIRNR:PIRNR028865}
TAIR10	AT2G36900.1	3E-80	membrin 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	11256105	11260519	+
GWHAAZE00000002	mRNA	11256105	11260519	+
GWHAAZE00000002	exon	11256105	11256349	+
GWHAAZE00000002	exon	11256774	11256894	+
GWHAAZE00000002	exon	11257012	11257161	+
GWHAAZE00000002	exon	11260358	11260519	+
GWHAAZE00000002	CDS	11256105	11256349	+
GWHAAZE00000002	CDS	11256774	11256894	+
GWHAAZE00000002	CDS	11257012	11257161	+
GWHAAZE00000002	CDS	11260358	11260519	+

Transcript Sequence
>GWHTAAZE005648 ATGATGGCTGTGGAAGGCGGTGGAACGCTATCGGAAGTGTATCAGGGATCGAAGAGGTTGTTGTTGAAGTGCAGGGATGGTCTCGAGAGGCTTGAGCGCCTCGAGTTCTCCTCCTCTTCCTTGGATTCGCCGGAGCTATCCTTCTCCGTTCAGAGGGACATCTCTCAGATCCAATCCCTCTGCTCCGACATGGACCGCCTTTGGAGATCCGTCCCGGCCAAATCCCAGCGCGATCTCTGGAAGCGAAAAGTGGAGCAAGTAGCTGAAGAGGCTGACTCGTTGAAAGAAAGTCTTGACAGGTATTTCCAACGGCATCAGCGACGGATGCAAGAAGTTCAAGAGAGGGCAGAATTGCTTGGAAGAGCTAATGGGGATTCCTCTCATGTTCTGAGAATTTTCGATGAGGAAGCACAAGCAATGCAGTCAGCCCGTAACTCATCCAGGATGCTGGAAGAAGCCACTGCCACCGGTGTGGCTATCCTTTCCAAGTATTCTGAACAAAGGGATCGCTTAAAGAGAGCTCAACGTAAGGCGCTTGATGTACTCAACACACTGGGGCTATCAAATTCAGTATTGAGGTTGATAGAGAGGCGGAATCGCGTCGATAAATGGATTAAATACGCAGGCATGGTCTTCACAATCGTCATCCTATTTGTCTTCTGGAGGTGGACGCGTTGA

Network for GWHGAAZE005640

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12352.9	V-SNARE_C	134	199	2.20E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08496	GOSR2, BOS1	SNARE interactions in vesicular transport	map04130

Gene Ontology

GO term	Ontology	Name
GO:0016192	biological_process	vesicle-mediated transport
GO:0005794	cellular_component	Golgi apparatus
GO:0005484	molecular_function	SNAP receptor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	62.526
	SRR3591706	second leaf	12.960
	SRR3591707	mature leaf	12.306
	SRR3591708	Shoot apex	18.694
	SRR3591709	Stem	37.938
	SRR3591710	White floral bud	29.599
	SRR3591711	White flower	29.259
	SRR3591712	Green floral bud	30.605
	SRR3591713	Yellow flower	30.814
SRP173429	SRR8316895	Juvenile bud stage	67.644
	SRR8316896	Juvenile bud stage	89.480
	SRR8316897	Juvenile bud stage	57.626
	SRR8316894	Third green stage	11.242
	SRR8316900	Third green stage	33.460
	SRR8316901	Third green stage	65.684
	SRR8316898	Complete white stage	10.365
	SRR8316899	Complete white stage	61.720
	SRR8316903	Complete white stage	17.663
	SRR8316902	Silver flowering stage	15.153
	SRR8316904	Silver flowering stage	14.872
	SRR8316905	Silver flowering stage	9.690
	SRR8316906	Gold flowering stage	24.743
	SRR8316907	Gold flowering stage	27.338
	SRR8316908	Gold flowering stage	31.934
SRP132670	SRR6706286	Control	23.665
	SRR6706287	Light intensity 50%	25.753
	SRR6706288	Light intensity 20%	27.140
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	50.006
	CNS0095593	Slightly white alabastrum(diploid) 2	73.909
	CNS0095594	Slightly white alabastrum(diploid) 3	64.601
	CNS0095595	Whole white alabastrum(diploid) 2	69.369
	CNS0095596	Whole white alabastrum(diploid) 3	28.420
	CNS0095597	Whole white alabastrum(diploid) 4	47.023
	CNS0095598	Silvery flower (diploied) 1	49.824
	CNS0095599	Silvery flower (diploied) 2	84.384
	CNS0095600	Silvery flower (diploied) 3	43.374
	CNS0095601	Golden flower (diploid) 1	54.655
	CNS0095602	Golden flower (diploid) 2	64.086
	CNS0095603	Golden flower (diploid) 3	51.652
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.105
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.583
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.401
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.134
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.773
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.653
	CNS0095610	Silvery flower (tetraploid) 1	25.827
	CNS0095611	Silvery flower (tetraploid) 2	22.806
	CNS0095612	Silvery flower (tetraploid) 3	28.407
	CNS0095613	Golden flower (tetraploid) 1	22.968
	CNS0095614	Golden flower (tetraploid) 2	23.309
	CNS0095615	Golden flower (tetraploid) 3	22.172
CRA001975	CRR073297	Stem 1	47.993
	CRR073298	Stem 2	47.848
	CRR073299	Stem 3	45.493
	CRR073300	Leaf 1	67.038
	CRR073301	Leaf 2	88.447
	CRR073302	Leaf 3	42.418
	CRR073303	Juvenile bud 1	47.284
	CRR073304	Juvenile bud 2	60.336
	CRR073305	Juvenile bud 3	58.072
	CRR073306	Third green 1	76.612
	CRR073307	Third green 2	83.223
	CRR073308	Third green 3	68.859
	CRR073309	Second white 1	31.426
	CRR073310	Second white 2	54.462
	CRR073311	Second white 3	34.642
	CRR073312	Silver flowering 1	48.917
	CRR073313	Silver flowering 2	44.549
	CRR073314	Silver flowering 3	35.954
	CRR073315	Gold flowering 1	30.140
	CRR073316	Gold flowering 2	52.940
	CRR073317	Gold flowering 3	29.297
	CRR073318	Tawny withering 1	65.892
	CRR073319	Tawny withering 2	116.035
	CRR073320	Tawny withering 3	90.169