Gene detail

Detail information of GWHGAAZE005595

Functional Annotation

Database	Orthologs	Annotation
Nr	KDP41243.1	hypothetical protein JCGZ_15650 [Jatropha curcas]
Swissprot	tr\|Q42510\|GNOM_ARATH	ARF guanine-nucleotide exchange factor GNOM
trEMBL	tr\|A0A067L230\|A0A067L230_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP41243.1}
TAIR10	AT1G13980.2	sec7 domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	10456386	10465250	-
GWHAAZE00000002	mRNA	10456386	10465250	-
GWHAAZE00000002	exon	10464510	10465250	-
GWHAAZE00000002	exon	10459102	10459572	-
GWHAAZE00000002	exon	10456386	10458980	-
GWHAAZE00000002	CDS	10464510	10465250	-
GWHAAZE00000002	CDS	10459102	10459572	-
GWHAAZE00000002	CDS	10456386	10458980	-

Transcript Sequence
>GWHTAAZE005603 ATGGGGCGCTTAAAGCTGCAACCTGGAATTAAGGCAATTGAAGAAGAACCTGAAGATTGTGATACTACCTTTTCTGATAGAGATAAAGCTGCTTTAGCATGCATGATTAATTCAGAAATAGGTGCTGTGTTGGCGGTCATGAGGAGGAATGTGAGATGGGGGGGTCGTTATATGTCGGGTGATGATCAGCTAGAGCACTCACTTATCCAGACTCTCAAGGCTTTACGGAGGCAAATATTTTCTTGGCAGCATCAATGGCATAGCATTAATCCAGTTGCATATCTGCAGCCATTTTTGGATGTAATCCGCTCAGATGAAACTGATGCTGCGCCAATCACAGGTGTCGCTTTGTCATCGCTTTATAAGATTTTAACTCTCGATATGCTAGACCTGAACACTGTTAATGTTGAAGAAGCGATGCACTTGGTTGTTGATGGCGTGACTAGCTGCCGATTTGAGGTGACTGACCCTGCATCTGAAGAGGTAGTCCTGATGAAGATTCTTCAGGTTCTTCTGGCTTGCATGAAAAGCAAAGCATCGGTTATGTTGAGTAATCAGCATGTTTGCACCATAGTGAACACGTGTTTTCGTGTAGTTCATCAAGCGGGAACAAAAGGTGAGCTGCTACAGCGGATAGCTCGCCACACAATGCATGAGCTTGTTAGGTGTATTTTTTCACATCTTCCAGACGTTGACAACACGGAACTCTCGTTGGTTAATGGAGGTGGTTCTAACAAGGAGGTCAGTGGGCAGCATCGTGATTATAGTTTTGGGAGTAAACAATTAGAGAACGGCAACGGTAATTCCGGATATGATGGCCAAGCATCCTCTGCAAGTTTTGCTCCTAATGCTGGTCTAGTTGCTTCTGGGATGGATGAAAATATAGTTCCTCCCGGTAATGGCAAAGATACTGTTCCCTATGATGTGCATTTGATGACCGAGCCATATGGGATCCCCTGCATGGTGGAGATATTTCACTTCTTGTGTTCATCTTTAAACGACGTTGAGCACTTGGCAATGGGTCCTAGGTCAAACACTATAGCTTTTGACGAAGATGTGCCTCTTTTCGCCCTCGGTTTGATCAATTCGGCTATTGAATTGGGGGGTCCCTCTATTCGTAGACACCCCAGATTGTTGAGTCTGGTCCAGGATGAGCTGTTCCGTAATCTGATGCAATTCGGCTTGTCGACGAGCCCACCAATTCTTTCAATGCAGCAGGAGGTTGCCATGGAGGCTCTTGTCGATTTATGCAGGCAGAAAGCTTTTATGGTGGAGATGTATGCTAACTTAGATTGTGATATAACTTGCAGTAACGTATTTGAAGACCTTGCCAATTTGTTGTCGAAAAACGCGTTTCCAGTGAACTGCCCTTTGTCTGCTATGCATATTCTTGCTCTGGATGGTCTCATTGCGGTAATTCAGGGTATGGCTGAGAGGATCGGCAATGCATCAGTTAGTTCAGAACCGGCTCCGGTAAATCTCGATGAGTACACCCCATTTTGGATGGTAAAGTGCAACAACTATAGTGATCCTGATCATTGGGTCCCGTTTGTTCGCCGGAGAAAATACATTAAGAGGAGGCTTATGATTGGTGCTGATCATTTCAATCGGGATCCCAAGAAAGGGTTAGAATTTCTTCAAGGAACACATCTTTTGCCCGACAAACTGGATCCCCAAAGTGTGGCTTGCTTTTTCAGGTATACGGCTGGGTTAGATAAGAATCTTGTTGGGGATTTCCTTGGGAATCACGATGAGTTTTGTGTTCAAGTTCTTCACGAATTTGCTTGGACTTTTGATTTTCAAGACATGAACCTCGATACTGCATTGCGGCTGTTTCTGGAAACTTTCCGACTACCCGGAGAATCACAAAAGATACAGAGGGTGCTCGAGGCATTCTCGGAGCGGTATTACGAGCAGTCACCACAGATTCTTGCTAACAAGGACGCTGCTCTCTTGTTGTCCTACTCAATAATAATGCTCAACACGGATCAGCACAATGTACAAGTTAAGAAGAAGATGACAGAAGAGGATTTTATCCGGAATAATCGGCACATCAATGGAGGCAACGATCTTCCTCGAGAATTCTTGACGGAGCTTTACCACTCAATTTGCAAGAACGAGATCCGTACTACCCCGGAACAAGGTGCCGGTTTCCCCGAGATGACCCCAAGCCGTTGGATTGATTTAATGCACAAGTCGAAGAAGACTGCTCCGTTCATTTTGTCAGATTCCAGAGCCCATCTTGACCGCGATATGTTTGCCATAATGTCCGGCCCAACGATTGCTGCTATCTCTGTGGTATTTGATCATGCAGAACTCGAGGATGTCTACCAAACATGCATCGATGGATTCTTAGCCGTTGCAAAAATTTCAGCATGCCATCATCTTGAAGACGTTCTGGATGATCTGGTTGTGTCTCTCTGCAAGTTCACAACCCTCTTGACCCCGTTATCTGTTGAGGAACCTGTTCTTGCCTTTGGCGATGACGCAAAAGCCAGGATGGCAACTATAACGGTATTCACCATTGCAAATAGATACGGTGATTTCATACGTGCAGGCTGGAGGAATATTCTTGATTGTATCTTGAAACTGCACAAGCTTGGTCTTCTTCCTGCTCGTGTGGCCAGTGATGCAGCTGATGATTTGGAGCCCTCTTCCGAACCTGGACATGGTAAGCCTCTAACAAATTCTTTATCCTCTGTTCACGTGCCATCTGTGGGTACCCCAAGGAGATCTTCTGGGCTAATGGGTCGGTTCAGTCAGCTCTTATCTCTTGATACAGAGGAGCCGAGATTGCAACCCACTGAGCAACAACTTGCTGCTCATCAACGCACCCTTCAAACAATTCAAAAATGCCATGTCGACAGCATATTTACAGAGAGTAAGTTTCTTCAAGCCGATTCTTTGTTACACCTTGCACGAGCACTCACTTGGGCTGCAGGCCGATCTCAGAAGGGAAGTAGTTCTCCTGAAGATGAAGACACTGCAGTTTTCTGCTTAGAATTGCTGATTGCAATTACCCTCAACAACAGGGACAGAATTGTCCTCCTCTGGCAGGGCGTTTATGAGCACATATCTAACATTGTTCAGTCCACTGTGATGCCGTGTGCCCTAGTTGAGAAGGCCGTGTTTGGACTCCTCCGGATTTGCCAGCGGCTTCTTCCATATAAAGAGAACCTGGCTGATGAACTCTTGAGGTCACTACATCTAGTTCTGAAACTGGATGCTCGTGTTGCTGATGCATACTGTGAGCAAATCACACAGGAAGTCAGTCGACTTGTGAAAGCAAATGCAACTCACATCCGATCCCAAGCGGGCTGGCGAACAATCGCGTCGTTACTTTCTATCACGGCCCGTCACCCGGAAGCTTCTGAAGCAGGATTCGATGCGCTGTTGTTCATCATGTCCGAAGGGGCCCACTTAATGCCGGCCAATTTCGTTGTGTGCGTGGATGCTGCACGACAATTTGCAGAGTCTCGTGTCGGACAGGCCGATCGGTCCATCCGTTCGCTCGATCTTATGGGGGGTTCAGTCTCTTGTTTAACAAGGTGGGCCCAAGAAGCTAAAGAAGCAATGGGGGAGGTCGAGTCCGTAAAAATGTCTCAGGATATTGGGGAGATGTGGCTGAGGCTGGTCCAAGGGCTGAGAAAAGTTTGTTTGGACCAGAGAGAAGAAGTTAGGAACCACTCCCTCTCATCACTCCAAATGTGTTTGACCGGAGTTGACGAGGTCAACATTCACACGGACTATGGTTGCAGTGTTTTGATTTGGTCATATTCACAGTCCTCGAAGACTTGCTTGAACTAG

Network for GWHGAAZE005595

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12783.8	Sec7_N	319	405	4.40E-10
PF01369.21	Sec7	525	708	5.10E-70

Protein Sequence

>GWHPAAZE005599
MGRLKLQPGIKAIEEEPEDCDTTFSDRDKAALACMINSEIGAVLAVMRRNVRWGGRYMSGDDQLEHSLIQTLKALRRQIFSWQHQWHSINPVAYLQPFLDVIRSDETDAAPITGVALSSLYKILTLDMLDLNTVNVEEAMHLVVDGVTSCRFEVTDPASEEVVLMKILQVLLACMKSKASVMLSNQHVCTIVNTCFRVVHQAGTKGELLQRIARHTMHELVRCIFSHLPDVDNTELSLVNGGGSNKEVSGQHRDYSFGSKQLENGNGNSGYDGQASSASFAPNAGLVASGMDENIVPPGNGKDTVPYDVHLMTEPYGIPCMVEIFHFLCSSLNDVEHLAMGPRSNTIAFDEDVPLFALGLINSAIELGGPSIRRHPRLLSLVQDELFRNLMQFGLSTSPPILSMQQEVAMEALVDLCRQKAFMVEMYANLDCDITCSNVFEDLANLLSKNAFPVNCPLSAMHILALDGLIAVIQGMAERIGNASVSSEPAPVNLDEYTPFWMVKCNNYSDPDHWVPFVRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAWTFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQILANKDAALLLSYSIIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLPREFLTELYHSICKNEIRTTPEQGAGFPEMTPSRWIDLMHKSKKTAPFILSDSRAHLDRDMFAIMSGPTIAAISVVFDHAELEDVYQTCIDGFLAVAKISACHHLEDVLDDLVVSLCKFTTLLTPLSVEEPVLAFGDDAKARMATITVFTIANRYGDFIRAGWRNILDCILKLHKLGLLPARVASDAADDLEPSSEPGHGKPLTNSLSSVHVPSVGTPRRSSGLMGRFSQLLSLDTEEPRLQPTEQQLAAHQRTLQTIQKCHVDSIFTESKFLQADSLLHLARALTWAAGRSQKGSSSPEDEDTAVFCLELLIAITLNNRDRIVLLWQGVYEHISNIVQSTVMPCALVEKAVFGLLRICQRLLPYKENLADELLRSLHLVLKLDARVADAYCEQITQEVSRLVKANATHIRSQAGWRTIASLLSITARHPEASEAGFDALLFIMSEGAHLMPANFVVCVDAARQFAESRVGQADRSIRSLDLMGGSVSCLTRWAQEAKEAMGEVESVKMSQDIGEMWLRLVQGLRKVCLDQREEVRNHSLSSLQMCLTGVDEVNIHTDYGCSVLIWSYSQSSKTCLN

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18443	GBF1	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0032012	biological_process	regulation of ARF protein signal transduction
GO:0005086	molecular_function	ARF guanyl-nucleotide exchange factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.054
	SRR3591706	second leaf	8.996
	SRR3591707	mature leaf	7.792
	SRR3591708	Shoot apex	13.213
	SRR3591709	Stem	12.595
	SRR3591710	White floral bud	8.769
	SRR3591711	White flower	8.171
	SRR3591712	Green floral bud	12.958
	SRR3591713	Yellow flower	5.228
SRP173429	SRR8316895	Juvenile bud stage	7.380
	SRR8316896	Juvenile bud stage	8.962
	SRR8316897	Juvenile bud stage	4.020
	SRR8316894	Third green stage	4.533
	SRR8316900	Third green stage	10.510
	SRR8316901	Third green stage	9.999
	SRR8316898	Complete white stage	3.398
	SRR8316899	Complete white stage	14.345
	SRR8316903	Complete white stage	6.393
	SRR8316902	Silver flowering stage	1.904
	SRR8316904	Silver flowering stage	3.653
	SRR8316905	Silver flowering stage	1.610
	SRR8316906	Gold flowering stage	6.252
	SRR8316907	Gold flowering stage	5.152
	SRR8316908	Gold flowering stage	5.982
SRP132670	SRR6706286	Control	11.083
	SRR6706287	Light intensity 50%	12.094
	SRR6706288	Light intensity 20%	13.108
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.264
	CNS0095593	Slightly white alabastrum(diploid) 2	5.630
	CNS0095594	Slightly white alabastrum(diploid) 3	4.825
	CNS0095595	Whole white alabastrum(diploid) 2	5.470
	CNS0095596	Whole white alabastrum(diploid) 3	5.037
	CNS0095597	Whole white alabastrum(diploid) 4	5.261
	CNS0095598	Silvery flower (diploied) 1	8.789
	CNS0095599	Silvery flower (diploied) 2	6.063
	CNS0095600	Silvery flower (diploied) 3	10.893
	CNS0095601	Golden flower (diploid) 1	5.952
	CNS0095602	Golden flower (diploid) 2	14.687
	CNS0095603	Golden flower (diploid) 3	13.228
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.939
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.542
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.211
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.818
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.905
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.277
	CNS0095610	Silvery flower (tetraploid) 1	11.733
	CNS0095611	Silvery flower (tetraploid) 2	13.998
	CNS0095612	Silvery flower (tetraploid) 3	8.678
	CNS0095613	Golden flower (tetraploid) 1	3.991
	CNS0095614	Golden flower (tetraploid) 2	9.727
	CNS0095615	Golden flower (tetraploid) 3	8.122
CRA001975	CRR073297	Stem 1	22.723
	CRR073298	Stem 2	22.827
	CRR073299	Stem 3	24.152
	CRR073300	Leaf 1	23.392
	CRR073301	Leaf 2	19.785
	CRR073302	Leaf 3	18.702
	CRR073303	Juvenile bud 1	20.570
	CRR073304	Juvenile bud 2	15.895
	CRR073305	Juvenile bud 3	32.185
	CRR073306	Third green 1	4.257
	CRR073307	Third green 2	3.607
	CRR073308	Third green 3	6.072
	CRR073309	Second white 1	6.217
	CRR073310	Second white 2	4.068
	CRR073311	Second white 3	4.789
	CRR073312	Silver flowering 1	3.446
	CRR073313	Silver flowering 2	5.171
	CRR073314	Silver flowering 3	3.128
	CRR073315	Gold flowering 1	7.010
	CRR073316	Gold flowering 2	13.247
	CRR073317	Gold flowering 3	17.077
	CRR073318	Tawny withering 1	17.747
	CRR073319	Tawny withering 2	10.650
	CRR073320	Tawny withering 3	18.136