Detail information of GWHGAAZE005576


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002277802.10PREDICTED: UDP-glucuronic acid decarboxylase 1 [Vitis vinifera]
Swissprottr|Q8VZC0|UXS1_ARATH0UDP-glucuronic acid decarboxylase 1
trEMBLtr|F6HQX8|F6HQX8_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB57027.1}
TAIR10AT3G53520.10UDP-glucuronic acid decarboxylase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1019729410203403-
GWHAAZE00000002mRNA1019729410203403-
GWHAAZE00000002exon1019729410197503-
GWHAAZE00000002exon1019781510197907-
GWHAAZE00000002exon1020067910200753-
GWHAAZE00000002exon1020087810200961-
GWHAAZE00000002exon1020211210202191-
GWHAAZE00000002exon1020227610202457-
GWHAAZE00000002exon1020278110203403-
GWHAAZE00000002CDS1020278110203403-
GWHAAZE00000002CDS1020227610202457-
GWHAAZE00000002CDS1020211210202191-
GWHAAZE00000002CDS1020087810200961-
GWHAAZE00000002CDS1020067910200753-
GWHAAZE00000002CDS1019781510197907-
GWHAAZE00000002CDS1019729410197503-
Transcript Sequence

Network for GWHGAAZE005576

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16363.6GDP_Man_Dehyd1224305.40E-56
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08678UXS1, uxs Metabolic pathways map01100
Amino sugar and nucleotide sugar metabolismmap00520

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf75.451
SRR3591706second leaf28.431
SRR3591707mature leaf17.332
SRR3591708Shoot apex19.041
SRR3591709Stem65.889
SRR3591710White floral bud52.489
SRR3591711White flower22.558
SRR3591712Green floral bud64.212
SRR3591713Yellow flower18.257
SRP173429 SRR8316895Juvenile bud stage 18.567
SRR8316896Juvenile bud stage 40.783
SRR8316897Juvenile bud stage 17.312
SRR8316894Third green stage 18.739
SRR8316900Third green stage 59.334
SRR8316901Third green stage 58.623
SRR8316898Complete white stage 21.728
SRR8316899Complete white stage 39.413
SRR8316903Complete white stage 40.061
SRR8316902Silver flowering stage8.467
SRR8316904Silver flowering stage21.458
SRR8316905Silver flowering stage8.193
SRR8316906Gold flowering stage 14.309
SRR8316907Gold flowering stage 19.836
SRR8316908Gold flowering stage 18.261
SRP132670SRR6706286Control29.514
SRR6706287Light intensity 50%34.217
SRR6706288Light intensity 20%34.152
CNP0000432CNS0095592Slightly white alabastrum(diploid) 139.870
CNS0095593Slightly white alabastrum(diploid) 243.601
CNS0095594Slightly white alabastrum(diploid) 342.114
CNS0095595Whole white alabastrum(diploid) 243.449
CNS0095596Whole white alabastrum(diploid) 356.391
CNS0095597Whole white alabastrum(diploid) 447.145
CNS0095598Silvery flower (diploied) 18.027
CNS0095599Silvery flower (diploied) 212.301
CNS0095600Silvery flower (diploied) 316.136
CNS0095601Golden flower (diploid) 15.059
CNS0095602Golden flower (diploid) 29.229
CNS0095603Golden flower (diploid) 310.982
CNS0095604Slightly white alabastrum(tetraploid) 162.687
CNS0095605Slightly white alabastrum(tetraploid) 256.922
CNS0095606Slightly white alabastrum(tetraploid) 338.030
CNS0095607Whole white alabastrum(tetraploid) 167.407
CNS0095608Whole white alabastrum(tetraploid) 259.766
CNS0095609Whole white alabastrum(tetraploid) 349.441
CNS0095610Silvery flower (tetraploid) 124.861
CNS0095611Silvery flower (tetraploid) 214.620
CNS0095612Silvery flower (tetraploid) 323.898
CNS0095613Golden flower (tetraploid) 111.030
CNS0095614Golden flower (tetraploid) 217.997
CNS0095615Golden flower (tetraploid) 39.222
CRA001975CRR073297Stem 134.989
CRR073298Stem 235.489
CRR073299Stem 335.162
CRR073300Leaf 169.684
CRR073301Leaf 259.823
CRR073302Leaf 353.561
CRR073303Juvenile bud 171.629
CRR073304Juvenile bud 273.687
CRR073305Juvenile bud 353.836
CRR073306Third green 142.637
CRR073307Third green 251.212
CRR073308Third green 347.804
CRR073309Second white 115.481
CRR073310Second white 215.516
CRR073311Second white 311.109
CRR073312Silver flowering 17.994
CRR073313Silver flowering 28.825
CRR073314Silver flowering 39.615
CRR073315Gold flowering 119.904
CRR073316Gold flowering 225.144
CRR073317Gold flowering 315.983
CRR073318Tawny withering 167.822
CRR073319Tawny withering 251.422
CRR073320Tawny withering 379.366