Gene detail

Detail information of GWHGAAZE005401

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010264622.1	1.5168E-102	PREDICTED: trihelix transcription factor GT-3b-like [Nelumbo nucifera]
Swissprot	tr\|Q9SDW0\|TGT3A_ARATH	7E-52	Trihelix transcription factor GT-3a
trEMBL	tr\|F6H6T6\|F6H6T6_VITVI	1E-94	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47922.1}
TAIR10	AT2G38250.1	6E-43	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	7361190	7362442	-
GWHAAZE00000002	mRNA	7361190	7362442	-
GWHAAZE00000002	exon	7361190	7361432	-
GWHAAZE00000002	exon	7361585	7361725	-
GWHAAZE00000002	exon	7362176	7362442	-
GWHAAZE00000002	CDS	7362176	7362442	-
GWHAAZE00000002	CDS	7361585	7361725	-
GWHAAZE00000002	CDS	7361190	7361432	-

Transcript Sequence
>GWHTAAZE005407 ATGGATGCAAGTCATCATCCTCATCCTCATATGAGCGTAAGTATCGATACAGGTGGTGGCGGCGGCAGCGATAGGTTCCCTCAATGGAGTATACAAGAAACAAGAGATTTCTTGATGATCAGAGCCGAGCTCGACCCTACTTTCATGGAAACCAAACGCAACAAACTCCTCTGGGAAGTCATCTCCACCAAGATGAAGGAGAAAGGCTACAATCGAAGCTCCGATCAGTGCAAGTGCAAGTGGAAAAACCTCGTCACTCGATACAAGGGATGTGAAACGATGGAGGCGGAAGGTATGAGGCAACAATTTCCCTTTTACAATGAGCTACAAGCGATTTTTGCAGCGAGAATGCAAAGAATGCTATGGATAGAAGCTGAGGGCGGGGCTAGCGGCTCAAAGAAGAAGGCGCAACAAATGCAAATGGAGGCGCAATGGATGAGGGCTTACGAGGCAAGGGAAGAGGAGAGGAAGGTGAAGGAGATGGAGTGGAGACAGACGATGGAAGCATTAGAGAATGAGAGGATAATGATGGATAGGAGGTGGAGAGAGAGAGAGGAACAAAGGAGGATGAGAGAGGAAGCTAGGGCTGAGAAGAGGGATGCTCTTATTACGGCATTGTTAAACAAGCTTAGAAGAGAAGATCATATGTAG

Network for GWHGAAZE005401

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13837.7	Myb_DNA-bind_4	28	112	1.40E-19

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.216
	SRR3591706	second leaf	0.935
	SRR3591707	mature leaf	0.517
	SRR3591708	Shoot apex	3.134
	SRR3591709	Stem	28.418
	SRR3591710	White floral bud	12.317
	SRR3591711	White flower	11.761
	SRR3591712	Green floral bud	9.751
	SRR3591713	Yellow flower	13.408
SRP173429	SRR8316895	Juvenile bud stage	7.000
	SRR8316896	Juvenile bud stage	5.819
	SRR8316897	Juvenile bud stage	6.195
	SRR8316894	Third green stage	1.436
	SRR8316900	Third green stage	5.630
	SRR8316901	Third green stage	8.079
	SRR8316898	Complete white stage	2.458
	SRR8316899	Complete white stage	10.664
	SRR8316903	Complete white stage	2.594
	SRR8316902	Silver flowering stage	2.967
	SRR8316904	Silver flowering stage	3.064
	SRR8316905	Silver flowering stage	1.403
	SRR8316906	Gold flowering stage	5.603
	SRR8316907	Gold flowering stage	3.095
	SRR8316908	Gold flowering stage	13.676
SRP132670	SRR6706286	Control	5.762
	SRR6706287	Light intensity 50%	7.332
	SRR6706288	Light intensity 20%	6.969
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.436
	CNS0095593	Slightly white alabastrum(diploid) 2	23.750
	CNS0095594	Slightly white alabastrum(diploid) 3	18.508
	CNS0095595	Whole white alabastrum(diploid) 2	13.730
	CNS0095596	Whole white alabastrum(diploid) 3	6.149
	CNS0095597	Whole white alabastrum(diploid) 4	11.210
	CNS0095598	Silvery flower (diploied) 1	17.095
	CNS0095599	Silvery flower (diploied) 2	25.982
	CNS0095600	Silvery flower (diploied) 3	9.353
	CNS0095601	Golden flower (diploid) 1	12.112
	CNS0095602	Golden flower (diploid) 2	10.577
	CNS0095603	Golden flower (diploid) 3	11.480
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.192
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.025
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.309
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.538
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.493
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.163
	CNS0095610	Silvery flower (tetraploid) 1	2.211
	CNS0095611	Silvery flower (tetraploid) 2	1.202
	CNS0095612	Silvery flower (tetraploid) 3	1.720
	CNS0095613	Golden flower (tetraploid) 1	4.559
	CNS0095614	Golden flower (tetraploid) 2	2.983
	CNS0095615	Golden flower (tetraploid) 3	1.144
CRA001975	CRR073297	Stem 1	7.142
	CRR073298	Stem 2	6.324
	CRR073299	Stem 3	5.122
	CRR073300	Leaf 1	13.217
	CRR073301	Leaf 2	23.400
	CRR073302	Leaf 3	11.178
	CRR073303	Juvenile bud 1	16.982
	CRR073304	Juvenile bud 2	14.148
	CRR073305	Juvenile bud 3	22.497
	CRR073306	Third green 1	6.594
	CRR073307	Third green 2	7.142
	CRR073308	Third green 3	5.704
	CRR073309	Second white 1	2.680
	CRR073310	Second white 2	7.503
	CRR073311	Second white 3	1.025
	CRR073312	Silver flowering 1	9.247
	CRR073313	Silver flowering 2	8.333
	CRR073314	Silver flowering 3	4.805
	CRR073315	Gold flowering 1	3.896
	CRR073316	Gold flowering 2	4.606
	CRR073317	Gold flowering 3	2.880
	CRR073318	Tawny withering 1	20.754
	CRR073319	Tawny withering 2	38.036
	CRR073320	Tawny withering 3	19.102