Detail information of GWHGAAZE005326


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008388326.14.1325E-100PREDICTED: proactivator polypeptide-like 1 [Malus domestica]
trEMBLtr|M5W3Z5|M5W3Z5_PRUPE9E-100Uncharacterized protein {ECO:0000313|EMBL:EMJ08444.1} (Fragment)
TAIR10AT3G51730.17E-56saposin B domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene62176876220459-
GWHAAZE00000002mRNA62176876220459-
GWHAAZE00000002exon62176876217806-
GWHAAZE00000002exon62182146218273-
GWHAAZE00000002exon62189706219167-
GWHAAZE00000002exon62197876219983-
GWHAAZE00000002exon62202486220366-
GWHAAZE00000002exon62204496220459-
GWHAAZE00000002CDS62204496220459-
GWHAAZE00000002CDS62202486220366-
GWHAAZE00000002CDS62197876219983-
GWHAAZE00000002CDS62189706219167-
GWHAAZE00000002CDS62182146218273-
GWHAAZE00000002CDS62176876217806-
Transcript Sequence

Network for GWHGAAZE005326

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05184.16SapB_1681038.10E-12
PF03489.18SapB_21081405.30E-05
PF03489.18SapB_21942271.50E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12382PSAP, SGP1 Lysosome map04142

Gene Ontology

GO term OntologyName
GO:0006665biological_processsphingolipid metabolic process
GO:0006629biological_processlipid metabolic process
GO:0005764cellular_componentlysosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf149.918
SRR3591706second leaf79.685
SRR3591707mature leaf173.051
SRR3591708Shoot apex50.514
SRR3591709Stem324.830
SRR3591710White floral bud226.795
SRR3591711White flower339.573
SRR3591712Green floral bud105.667
SRR3591713Yellow flower411.306
SRP173429 SRR8316895Juvenile bud stage 35.355
SRR8316896Juvenile bud stage 53.227
SRR8316897Juvenile bud stage 21.734
SRR8316894Third green stage 23.236
SRR8316900Third green stage 74.614
SRR8316901Third green stage 82.473
SRR8316898Complete white stage 141.650
SRR8316899Complete white stage 210.796
SRR8316903Complete white stage 213.457
SRR8316902Silver flowering stage213.598
SRR8316904Silver flowering stage294.703
SRR8316905Silver flowering stage155.693
SRR8316906Gold flowering stage 464.459
SRR8316907Gold flowering stage 424.939
SRR8316908Gold flowering stage 450.096
SRP132670SRR6706286Control63.688
SRR6706287Light intensity 50%63.545
SRR6706288Light intensity 20%65.930
CNP0000432CNS0095592Slightly white alabastrum(diploid) 167.268
CNS0095593Slightly white alabastrum(diploid) 252.100
CNS0095594Slightly white alabastrum(diploid) 359.047
CNS0095595Whole white alabastrum(diploid) 265.712
CNS0095596Whole white alabastrum(diploid) 367.528
CNS0095597Whole white alabastrum(diploid) 486.816
CNS0095598Silvery flower (diploied) 1139.272
CNS0095599Silvery flower (diploied) 2126.909
CNS0095600Silvery flower (diploied) 3303.037
CNS0095601Golden flower (diploid) 1141.877
CNS0095602Golden flower (diploid) 2313.449
CNS0095603Golden flower (diploid) 3293.881
CNS0095604Slightly white alabastrum(tetraploid) 159.646
CNS0095605Slightly white alabastrum(tetraploid) 259.897
CNS0095606Slightly white alabastrum(tetraploid) 365.542
CNS0095607Whole white alabastrum(tetraploid) 169.460
CNS0095608Whole white alabastrum(tetraploid) 271.662
CNS0095609Whole white alabastrum(tetraploid) 376.081
CNS0095610Silvery flower (tetraploid) 1276.583
CNS0095611Silvery flower (tetraploid) 2237.247
CNS0095612Silvery flower (tetraploid) 3269.114
CNS0095613Golden flower (tetraploid) 1225.155
CNS0095614Golden flower (tetraploid) 2242.365
CNS0095615Golden flower (tetraploid) 3480.218
CRA001975CRR073297Stem 142.751
CRR073298Stem 236.281
CRR073299Stem 337.592
CRR073300Leaf 153.380
CRR073301Leaf 241.026
CRR073302Leaf 352.832
CRR073303Juvenile bud 165.279
CRR073304Juvenile bud 277.363
CRR073305Juvenile bud 366.224
CRR073306Third green 1151.229
CRR073307Third green 2244.419
CRR073308Third green 3169.403
CRR073309Second white 1345.428
CRR073310Second white 2276.999
CRR073311Second white 3210.454
CRR073312Silver flowering 1209.828
CRR073313Silver flowering 2212.623
CRR073314Silver flowering 3155.902
CRR073315Gold flowering 198.997
CRR073316Gold flowering 2102.136
CRR073317Gold flowering 3101.665
CRR073318Tawny withering 188.833
CRR073319Tawny withering 299.318
CRR073320Tawny withering 386.958