Detail information of GWHGAAZE005319


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002270134.11.68952E-70PREDICTED: transcription repressor OFP1 [Vitis vinifera]
Swissprottr|Q9LZW2|OFP1_ARATH5E-41Transcription repressor OFP1
trEMBLtr|F6GXX8|F6GXX8_VITVI4E-71Putative uncharacterized protein {ECO:0000313|EMBL:CCB44779.1}
TAIR10AT5G01840.16E-23ovate family protein 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene61257816126773-
GWHAAZE00000002mRNA61257816126773-
GWHAAZE00000002exon61267066126773-
GWHAAZE00000002exon61257816126501-
GWHAAZE00000002CDS61267066126773-
GWHAAZE00000002CDS61257816126501-
Transcript Sequence

Network for GWHGAAZE005319

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13724.7DNA_binding_22411.60E-15
PF04844.14Ovate2002562.30E-25
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyOFP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.525
SRR3591706second leaf0.395
SRR3591707mature leaf0.537
SRR3591708Shoot apex0.644
SRR3591709Stem1.845
SRR3591710White floral bud0.333
SRR3591711White flower0.477
SRR3591712Green floral bud0.479
SRR3591713Yellow flower0.202
SRP173429 SRR8316895Juvenile bud stage 0.548
SRR8316896Juvenile bud stage 0.477
SRR8316897Juvenile bud stage 0.081
SRR8316894Third green stage 0.085
SRR8316900Third green stage 0.278
SRR8316901Third green stage 0.139
SRR8316898Complete white stage 0.097
SRR8316899Complete white stage 0.270
SRR8316903Complete white stage 0.175
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.040
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.615
SRR6706287Light intensity 50%1.029
SRR6706288Light intensity 20%0.520
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.577
CNS0095593Slightly white alabastrum(diploid) 20.491
CNS0095594Slightly white alabastrum(diploid) 30.663
CNS0095595Whole white alabastrum(diploid) 20.534
CNS0095596Whole white alabastrum(diploid) 30.485
CNS0095597Whole white alabastrum(diploid) 40.740
CNS0095598Silvery flower (diploied) 10.125
CNS0095599Silvery flower (diploied) 20.139
CNS0095600Silvery flower (diploied) 30.105
CNS0095601Golden flower (diploid) 10.104
CNS0095602Golden flower (diploid) 20.238
CNS0095603Golden flower (diploid) 30.366
CNS0095604Slightly white alabastrum(tetraploid) 10.867
CNS0095605Slightly white alabastrum(tetraploid) 20.248
CNS0095606Slightly white alabastrum(tetraploid) 31.036
CNS0095607Whole white alabastrum(tetraploid) 10.408
CNS0095608Whole white alabastrum(tetraploid) 20.298
CNS0095609Whole white alabastrum(tetraploid) 30.242
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.158
CNS0095612Silvery flower (tetraploid) 30.020
CNS0095613Golden flower (tetraploid) 10.061
CNS0095614Golden flower (tetraploid) 20.324
CNS0095615Golden flower (tetraploid) 30.144
CRA001975CRR073297Stem 10.715
CRR073298Stem 23.956
CRR073299Stem 32.166
CRR073300Leaf 11.336
CRR073301Leaf 21.134
CRR073302Leaf 30.244
CRR073303Juvenile bud 10.401
CRR073304Juvenile bud 20.006
CRR073305Juvenile bud 30.339
CRR073306Third green 10.259
CRR073307Third green 20.067
CRR073308Third green 30.000
CRR073309Second white 10.253
CRR073310Second white 20.007
CRR073311Second white 30.000
CRR073312Silver flowering 10.199
CRR073313Silver flowering 20.970
CRR073314Silver flowering 30.000
CRR073315Gold flowering 12.764
CRR073316Gold flowering 21.382
CRR073317Gold flowering 33.860
CRR073318Tawny withering 110.406
CRR073319Tawny withering 23.283
CRR073320Tawny withering 310.230