Gene detail

Detail information of GWHGAAZE005282

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011100487.1	PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase-like [Sesamum indicum]
Swissprot	tr\|Q42908\|PMGI_MESCR	2,3-bisphosphoglycerate-independent phosphoglycerate mutase
trEMBL	tr\|A0A068VAU3\|A0A068VAU3_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_183 {ECO:0000313\|EMBL:CDP17861.1}
TAIR10	AT3G08590.2	Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	5438100	5441854	+
GWHAAZE00000002	mRNA	5438100	5441854	+
GWHAAZE00000002	exon	5438100	5438192	+
GWHAAZE00000002	exon	5438281	5438408	+
GWHAAZE00000002	exon	5438628	5438778	+
GWHAAZE00000002	exon	5438883	5439086	+
GWHAAZE00000002	exon	5439755	5440179	+
GWHAAZE00000002	exon	5440646	5440838	+
GWHAAZE00000002	exon	5440927	5441022	+
GWHAAZE00000002	exon	5441226	5441381	+
GWHAAZE00000002	exon	5441690	5441854	+
GWHAAZE00000002	CDS	5438100	5438192	+
GWHAAZE00000002	CDS	5438281	5438408	+
GWHAAZE00000002	CDS	5438628	5438778	+
GWHAAZE00000002	CDS	5438883	5439086	+
GWHAAZE00000002	CDS	5439755	5440179	+
GWHAAZE00000002	CDS	5440646	5440838	+
GWHAAZE00000002	CDS	5440927	5441022	+
GWHAAZE00000002	CDS	5441226	5441381	+
GWHAAZE00000002	CDS	5441690	5441854	+

Transcript Sequence
>GWHTAAZE005288 ATGCAACCTTCATTACATTACATTCCCCTTGTGCACTATTCTCCCAGTACAAATGCAATTCACATCGGACTTGTTATCGATGAAGCTCAGTCAGGTGCTCCCGAAAAGTGGAGATTGGTCAAGGCTCATGGAACTGCAGTTGGGCTTCCAACCGATGATGACATGGGCAACAGTGAAGTGGGTCATAATGCTCTTGGTGCGGGGAGAATATATGCTCAAGGTGCAAAGCTTGTTGACTTAGCTCTTGCTTCTGGAAAAATATACGATGGAGAAGGTTTCAAGTACATTAAAGAATGTTTTGCAAGTGGCACATTGCATCTTATTGGATTGTTGAGTGATGGGGGAGTCCACTCCCGGCTTGATCAGTTGCAGTTGTTGCTAAAAGGTGTTGGTGAGCGTGGTGCTAAGAAAATACGTGTTCACATACTTACTGACGGCCGAGATGTTTTGGACGGATCAAGCATAGGCTTTGTTGAAACACTCGAGAATGAGCTTTCAAAACTGCGTGAGAAAGGTATCGATGCAAAGGTTGCTTCAGGTGGAGGTCGAATGTACGTCACTATGGATCGCTATGAGAATGATTGGAGTGTTGTGAAACGTGGGTGGGATGCTCAAGTTCTTGGTGAAGCACCACACAAGTTTAAGAGTGCTCTAGAAGCTGTAAAGAAATTGAGGGAAGGCCCTAAGGCTGACGACCAGTATTTACCTCCCTTTGTAATTGTTGACGATAATGGGAAGGCTGTAGGGCCAATAGTGGATGGTGATGCTGTTGTGACATTTAACTTCCGAGCAGATCGCATGGTTATGCTTGCTAAAGCACTTGAATATAAGGACTTTGATAAATTTGACAGAGTCCGGGTTCCTAAAATCCATTATGCTGGAATGCTCCAATATGATGGCGAGTTGAAGCTTCCAAGCCATTACCTTGTTTCTCCTCCAGAGATAGAGAGAACCTCTGGCGAATATTTGGTTCATAACGGTGTCCGTACATTTGCTTGCAGCGAGACTGTCAAGTTTGGTCATGTCACTTTTTTCTGGAACGGAAATCGGTCCGGATATTTTAACCCCGAGATGGAAGAATACGTGGAAATTCCAAGTGATAGTGGAATCACTTTCAACGAAAAACCGAAGATGAAGGCTTTGGAGATTGCTGAAAAGGCCAGGGATGCAATCCTCAGCCACAAATTCCACCAGGTACGGGTTAACCTACCCAATGGTGACATGGTCGGGCATACTGGTGACATTAAAGCTACTATTGTGGCCTGCAAGGCCGCTGATGATGCTGTCAAGATGATACTTGATGCAGTAGAGCAAGTCGGTGGAATATATATTGTCACAGCAGATCATGGAAATGCAGAAGACATGGTGAAGAGAGACAAGAAAGGGGAGCCTATTGTTGACAAGTCTGGCAATGTTTCGATACTTACCTCTCACACTCTTCAACCTGTGCCGATAGCAATCGGAGGACCTGGGTTGGCACCCAGTGTGAGATTTCGAAAGGATTTGCCCAATGGCGGGCTTGCTAATGTGGCTGCAACTGCAATGAATCTCCATGGATTTGAGGCTCCTCCTGACTACGAGCCAACTCTTATTGAGGTTGTTGATACCTAG

Network for GWHGAAZE005282

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01676.19	Metalloenzyme	26	522	3.40E-91
PF06415.14	iPGM_N	79	299	5.80E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15633	gpmI	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Methane metabolism	map00680
		Glycine, serine and threonine metabolism	map00260

Gene Ontology

GO term	Ontology	Name
GO:0006007	biological_process	glucose catabolic process
GO:0005737	cellular_component	cytoplasm
GO:0004619	molecular_function	phosphoglycerate mutase activity
GO:0030145	molecular_function	manganese ion binding
GO:0003824	molecular_function	catalytic activity
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.442
	SRR3591706	second leaf	1.554
	SRR3591707	mature leaf	3.608
	SRR3591708	Shoot apex	0.889
	SRR3591709	Stem	1.650
	SRR3591710	White floral bud	9.660
	SRR3591711	White flower	189.469
	SRR3591712	Green floral bud	63.217
	SRR3591713	Yellow flower	246.713
SRP173429	SRR8316895	Juvenile bud stage	42.362
	SRR8316896	Juvenile bud stage	116.595
	SRR8316897	Juvenile bud stage	55.238
	SRR8316894	Third green stage	27.066
	SRR8316900	Third green stage	98.080
	SRR8316901	Third green stage	100.113
	SRR8316898	Complete white stage	36.375
	SRR8316899	Complete white stage	20.402
	SRR8316903	Complete white stage	49.091
	SRR8316902	Silver flowering stage	330.996
	SRR8316904	Silver flowering stage	391.015
	SRR8316905	Silver flowering stage	244.210
	SRR8316906	Gold flowering stage	1175.456
	SRR8316907	Gold flowering stage	1318.857
	SRR8316908	Gold flowering stage	1118.531
SRP132670	SRR6706286	Control	85.560
	SRR6706287	Light intensity 50%	69.983
	SRR6706288	Light intensity 20%	64.988
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	73.959
	CNS0095593	Slightly white alabastrum(diploid) 2	50.097
	CNS0095594	Slightly white alabastrum(diploid) 3	92.612
	CNS0095595	Whole white alabastrum(diploid) 2	68.237
	CNS0095596	Whole white alabastrum(diploid) 3	86.387
	CNS0095597	Whole white alabastrum(diploid) 4	65.919
	CNS0095598	Silvery flower (diploied) 1	101.452
	CNS0095599	Silvery flower (diploied) 2	235.076
	CNS0095600	Silvery flower (diploied) 3	595.423
	CNS0095601	Golden flower (diploid) 1	258.413
	CNS0095602	Golden flower (diploid) 2	701.647
	CNS0095603	Golden flower (diploid) 3	677.689
	CNS0095604	Slightly white alabastrum(tetraploid) 1	120.810
	CNS0095605	Slightly white alabastrum(tetraploid) 2	110.167
	CNS0095606	Slightly white alabastrum(tetraploid) 3	46.122
	CNS0095607	Whole white alabastrum(tetraploid) 1	138.033
	CNS0095608	Whole white alabastrum(tetraploid) 2	168.640
	CNS0095609	Whole white alabastrum(tetraploid) 3	185.084
	CNS0095610	Silvery flower (tetraploid) 1	483.567
	CNS0095611	Silvery flower (tetraploid) 2	475.849
	CNS0095612	Silvery flower (tetraploid) 3	1033.716
	CNS0095613	Golden flower (tetraploid) 1	528.244
	CNS0095614	Golden flower (tetraploid) 2	587.200
	CNS0095615	Golden flower (tetraploid) 3	363.398
CRA001975	CRR073297	Stem 1	55.166
	CRR073298	Stem 2	48.906
	CRR073299	Stem 3	45.806
	CRR073300	Leaf 1	51.170
	CRR073301	Leaf 2	57.110
	CRR073302	Leaf 3	63.408
	CRR073303	Juvenile bud 1	65.376
	CRR073304	Juvenile bud 2	60.468
	CRR073305	Juvenile bud 3	35.897
	CRR073306	Third green 1	336.864
	CRR073307	Third green 2	232.404
	CRR073308	Third green 3	253.832
	CRR073309	Second white 1	2180.480
	CRR073310	Second white 2	1599.521
	CRR073311	Second white 3	1752.070
	CRR073312	Silver flowering 1	2282.547
	CRR073313	Silver flowering 2	2645.993
	CRR073314	Silver flowering 3	2898.970
	CRR073315	Gold flowering 1	23.216
	CRR073316	Gold flowering 2	21.622
	CRR073317	Gold flowering 3	16.096
	CRR073318	Tawny withering 1	21.825
	CRR073319	Tawny withering 2	35.967
	CRR073320	Tawny withering 3	17.524