Gene detail

Detail information of GWHGAAZE005274

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010653090.1	0	PREDICTED: probable galacturonosyltransferase 7 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9ZVI7\|GAUT7_ARATH	0	Probable galacturonosyltransferase 7
trEMBL	tr\|F6HMQ3\|F6HMQ3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55928.1}
TAIR10	AT2G38650.2	2E-159	galacturonosyltransferase 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	5265213	5269694	+
GWHAAZE00000002	mRNA	5265213	5269694	+
GWHAAZE00000002	exon	5265213	5265230	+
GWHAAZE00000002	exon	5265471	5265516	+
GWHAAZE00000002	exon	5265738	5265784	+
GWHAAZE00000002	exon	5265880	5266244	+
GWHAAZE00000002	exon	5267378	5267732	+
GWHAAZE00000002	exon	5267808	5268347	+
GWHAAZE00000002	exon	5269138	5269346	+
GWHAAZE00000002	exon	5269465	5269565	+
GWHAAZE00000002	exon	5269654	5269694	+
GWHAAZE00000002	CDS	5265213	5265230	+
GWHAAZE00000002	CDS	5265471	5265516	+
GWHAAZE00000002	CDS	5265738	5265784	+
GWHAAZE00000002	CDS	5265880	5266244	+
GWHAAZE00000002	CDS	5267378	5267732	+
GWHAAZE00000002	CDS	5267808	5268347	+
GWHAAZE00000002	CDS	5269138	5269346	+
GWHAAZE00000002	CDS	5269465	5269565	+
GWHAAZE00000002	CDS	5269654	5269694	+

Transcript Sequence
>GWHTAAZE005280 ATGCGAGCTCATTTGGATGATTTTAGAAGAGATTCTGTGAAGCCAGCTGAGAACAGAAGTATTGGTTCTCCTGTACGTAATGAGCTACCGAAACCAGCTGTGAAAACAAATAACACTAGGACTGGTGTTATGGGTGAAGTCACTCAAAGCGTTTTGCAGAACACTAGTGTTGGTGGAAGGGGCAAGGTTGGTGTTACGGGTGAAGTCGCTACAAATATGAAAGTTGATGATGATTCTGAAAAATCATGTGAGCTAAAATTTGGTAGCTACTGCTTATGGCGTAAAGAACACAAGGAAAAAATGGATGATTCTATGGTGAAGAAAATGAAAGACCAGCTTTATGTTGCTCGAGCTTATTACCCTAGTATTGCGAAGATCCCAACACTTGACAAGTTGTCACATGATATGAAGCAGAATATTCAAGAGTTTGAGCGAGTCCTTAGTGAAACTGCTACAGATAAAGATCTGCCACCTCAGATTGGAAAGAAGTTGCAGAAGATGGAAGCTGTAATAGGCAAAGCAAAATCATGCCCTGTAGATTGTAATAATGTTGATAAGAAATTAAGACAGTTAGTTGATCTGACCGAGGACGAAGCTAATTTCCACATGAAGCAGAGCGCCTTCCTTTACCAACTTGCAGTGCAAACAATGCCAAAAGGTCTCCACTGTCTTTCAATGCGACTAACTGTGGAGTATTTCAAATCTCCACTTGACATGGAACAGTCACTGACTGAGAAATATTTGAACCCTGACTTGCACCACTATGTTATATTCTCCAAAAATATACTTGCATCATCTGCAGTGATCAATTCGACCGCAATGCATGCAACAGAAAATTCAAATCAAGTTTTTCATGTGCTGACGGATACGCAGAATTACTTTGCCATGAAATTGTGGTTCTTCAGAAATACTTACAAGGAAGCAATGGTTCAGGTGTTGAACATTGAAGATCTTAACCTGAATGACAATGATAACAAGGCCACTCTGTCATTGCCTGAAGAATTTCGTGTTTCTTTCCGTACCGTAGATAATCTAGCTAGAGTACAAATTAGAACAGAGTACATGTCTGTATTTTCTCATTCGCACTATCTCCTTCCTAAGATATTCCAGAGTTTGAAGAAAGTTGTTGTTTTGGGTGATGATGTCATTGTCCAGCAAGACTTGTCTCACTTATGGAGCATTGACATGGATGGAAAAGTTAATGGTGCTGTGCAGTTCTGCGCAGTGAAGTTGGGGGAGCTGAAAAAATATGTTGGTGAGAACAGGTTTGATGAAAATTCATGTGCTTGGATGTCTGGACTAAATATTGTTGATCTAGTTAGGTGGAGAGAGCAAGATATAACTGGATACTACCAAAAGTTGGTCCAAGAGCGGCTGAGTGGAGAAGAGGGTTCGTTTGAAGGTGTTACATTGCATGCAAGCTTGCTAGCCTTCCAAGGTCAAGTTTATGCTCTTGATGATACCTTGGTACTGTCAGGACTGGGGCATGACTTTGGTCTGGATGTTCAAGCCATTCAGAAAGCAGCTGTGTTGCATTTTAATGGGAACATGAAACCTTGGCTTGAGCTGGGCATTCCAAGGATTGAAGAAGAGCAAAACTTTCTTTCCACTTTCTGGATGCAAAAGGAATTTATCCAAGCTAGCGTGTCTGAGGAAGGAGCTGCAAGTGTGATTAGCTGTGGCAAGGAAAAGGGAGATGGTGGTGGTGGCTGTGCTTGCTAG

Network for GWHGAAZE005274

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01501.21	Glyco_transf_8	223	522	6.60E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13648	GAUT	Metabolic pathways	map01100
K13648	GAUT	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.719
	SRR3591706	second leaf	24.534
	SRR3591707	mature leaf	12.318
	SRR3591708	Shoot apex	23.789
	SRR3591709	Stem	22.920
	SRR3591710	White floral bud	28.792
	SRR3591711	White flower	17.006
	SRR3591712	Green floral bud	59.099
	SRR3591713	Yellow flower	10.131
SRP173429	SRR8316895	Juvenile bud stage	22.508
	SRR8316896	Juvenile bud stage	29.543
	SRR8316897	Juvenile bud stage	17.154
	SRR8316894	Third green stage	17.849
	SRR8316900	Third green stage	49.294
	SRR8316901	Third green stage	46.785
	SRR8316898	Complete white stage	10.384
	SRR8316899	Complete white stage	41.571
	SRR8316903	Complete white stage	23.444
	SRR8316902	Silver flowering stage	6.316
	SRR8316904	Silver flowering stage	12.907
	SRR8316905	Silver flowering stage	5.146
	SRR8316906	Gold flowering stage	12.178
	SRR8316907	Gold flowering stage	11.690
	SRR8316908	Gold flowering stage	12.897
SRP132670	SRR6706286	Control	35.909
	SRR6706287	Light intensity 50%	38.961
	SRR6706288	Light intensity 20%	38.771
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.560
	CNS0095593	Slightly white alabastrum(diploid) 2	24.195
	CNS0095594	Slightly white alabastrum(diploid) 3	23.880
	CNS0095595	Whole white alabastrum(diploid) 2	30.432
	CNS0095596	Whole white alabastrum(diploid) 3	32.609
	CNS0095597	Whole white alabastrum(diploid) 4	29.262
	CNS0095598	Silvery flower (diploied) 1	12.674
	CNS0095599	Silvery flower (diploied) 2	13.806
	CNS0095600	Silvery flower (diploied) 3	17.618
	CNS0095601	Golden flower (diploid) 1	10.785
	CNS0095602	Golden flower (diploid) 2	16.213
	CNS0095603	Golden flower (diploid) 3	15.236
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.475
	CNS0095605	Slightly white alabastrum(tetraploid) 2	34.574
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.896
	CNS0095607	Whole white alabastrum(tetraploid) 1	36.131
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.565
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.780
	CNS0095610	Silvery flower (tetraploid) 1	16.137
	CNS0095611	Silvery flower (tetraploid) 2	13.869
	CNS0095612	Silvery flower (tetraploid) 3	18.469
	CNS0095613	Golden flower (tetraploid) 1	6.667
	CNS0095614	Golden flower (tetraploid) 2	11.726
	CNS0095615	Golden flower (tetraploid) 3	12.364
CRA001975	CRR073297	Stem 1	30.624
	CRR073298	Stem 2	29.746
	CRR073299	Stem 3	16.651
	CRR073300	Leaf 1	37.693
	CRR073301	Leaf 2	32.837
	CRR073302	Leaf 3	20.041
	CRR073303	Juvenile bud 1	25.318
	CRR073304	Juvenile bud 2	22.190
	CRR073305	Juvenile bud 3	25.915
	CRR073306	Third green 1	7.281
	CRR073307	Third green 2	6.556
	CRR073308	Third green 3	8.962
	CRR073309	Second white 1	5.771
	CRR073310	Second white 2	9.073
	CRR073311	Second white 3	5.532
	CRR073312	Silver flowering 1	4.443
	CRR073313	Silver flowering 2	4.219
	CRR073314	Silver flowering 3	7.080
	CRR073315	Gold flowering 1	6.159
	CRR073316	Gold flowering 2	10.410
	CRR073317	Gold flowering 3	5.454
	CRR073318	Tawny withering 1	16.094
	CRR073319	Tawny withering 2	13.826
	CRR073320	Tawny withering 3	16.458