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Detail information of GWHGAAZE005249
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_011097806.1
0
PREDICTED: protein PIR [Sesamum indicum]
Swissprot
tr|Q5S2C3|PIR_ARATH
0
Protein PIR
trEMBL
tr|M5W771|M5W771_PRUPE
0
Uncharacterized protein {ECO:0000313|EMBL:EMJ09587.1}
TAIR10
AT5G18410.2
0
transcription activators
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000002
gene
4911644
4919025
+
GWHAAZE00000002
mRNA
4911644
4919025
+
GWHAAZE00000002
exon
4911644
4911751
+
GWHAAZE00000002
exon
4911851
4911921
+
GWHAAZE00000002
exon
4913561
4913653
+
GWHAAZE00000002
exon
4914618
4914687
+
GWHAAZE00000002
exon
4914835
4914899
+
GWHAAZE00000002
exon
4915690
4915885
+
GWHAAZE00000002
exon
4915969
4916112
+
GWHAAZE00000002
exon
4916646
4916732
+
GWHAAZE00000002
exon
4917357
4917572
+
GWHAAZE00000002
exon
4917914
4918125
+
GWHAAZE00000002
exon
4918809
4919025
+
GWHAAZE00000002
CDS
4911644
4911751
+
GWHAAZE00000002
CDS
4911851
4911921
+
GWHAAZE00000002
CDS
4913561
4913653
+
GWHAAZE00000002
CDS
4914618
4914687
+
GWHAAZE00000002
CDS
4914835
4914899
+
GWHAAZE00000002
CDS
4915690
4915885
+
GWHAAZE00000002
CDS
4915969
4916112
+
GWHAAZE00000002
CDS
4916646
4916732
+
GWHAAZE00000002
CDS
4917357
4917572
+
GWHAAZE00000002
CDS
4917914
4918125
+
GWHAAZE00000002
CDS
4918809
4919025
+
Transcript Sequence
>GWHTAAZE005255 ATGAAGCAAAGTCAAGCCGAATTATATCTTGAAACTTATCAAGTTCTGGACTTGGAAATGAGTCGTCTGCGTGAAATTCAGAGATGGCAGGCAACAGCTGCTTCTAAACTAGCAGCTGATATGCAACGCTTTTCCAGGCCTGAGCGACGCATCAATGGTCCAACTGTAACTCATCTCTGGTCCATGTTGAGGTTATTGGATGTTTTGGTTCAACTTGATCACCTTAAAAATGCAAAAGCAAGCATTCCTAATGACTTCTCTTGGTATAAGAGGACATTCACTCAAGTCAGTGTTCAGTGGCAAGACACTGATTCAATGAGGGAAGAGTTAGATGATCTACAGATTTTCTTGAGCACTAGATGGGCGATTTTGTTGAATTTGCATGTTGAAATGTTCCGTGTGAATAATGTTGAAGACATTCTTCAAGTTCTCATAGTCTTTGCTGTTGAGTCACTGGAATTGGATTTCGCCCTTCTCTTTCCAGAACGACACATTCTTCTTCGCGTTTTGCCTGTACTTGTTGTCTTAGCAACGTCATCAGAAAAAGATAGCGAGTCATTGTATAAGAGGGTGAAAATCAACAGACTGATCAATATATTTAAGAATGATCCAGTTATCCCTGCATTCCCAGATCTCCATCTTTCTCCAGCTGCAATATTGAAAGAGTTGTCAATGTACTTCCCAAAATTCTCAGTGCAAACTCGTCTTCTCACTCTTCCAGCTCCTCATGAGCTCCCACCTCGTGAAAGACATTATTTGATGGTGAACCATATTGGAGCAATTCGCACTGAGCATGATGATTTCACTATTCGTTTTGCTTCATCTATGAATCAGCTTGTGTTATTGAAATCTATAGATGGTGCAGATATTGAGTGGTGCAAGGATGTTAAAGGAAACATGTATGATATGGTTGTTGAAGGTTTTCAGCTGTTAAGCAGGTGGACTGCGCGCATTTGGGAGCAATGCGCATGGAAATTTTCTCACCCGTGCAGGGATCCAGTTCCTACAGATTCACATGAGACATCCTTGTCATTTTCTGATTATGAAAAGGTGGTACGATATAATTATAGTGCAGAGGAAAGGAAAGCATTGGTTGAACTTGTTGGTTATATTAAGAGCATTGGATCAATGATGCAGCGTTGTGACACATTAGTAGCTGATGCCTTGTGGGAGACTATCCACACTGAGGTCCAGGATTTTGTGCAAAATACATTAGCGACAATGTTACGGACTACCTTCAGGAAGAAGAAGGACCTTTCTAGGATTCTTTCTGATATGAGGACTCTTTCAGCCGACTGGATGGCAAATACTAGCAAACCTGAATCTGAGCTGCAATCGTCAAATCATGGAGGTGAAGAAAGCAAAGGGAACTTCTTTTATCCAAGACCAGTAGCACCAACAACAGCACAGGTTTTTCCTCATAATTTGCCAGCATTCAGTATCTTGTTTCTTATGTTCAACCAGGTTTGTTCGTATTGA
Network for GWHGAAZE005249
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF07159.13
DUF1394
64
123
1.00E-05
PF05994.12
FragX_IP
300
471
1.90E-56
Protein Sequence
>GWHPAAZE005252 MKQSQAELYLETYQVLDLEMSRLREIQRWQATAASKLAADMQRFSRPERRINGPTVTHLWSMLRLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFKNDPVIPAFPDLHLSPAAILKELSMYFPKFSVQTRLLTLPAPHELPPRERHYLMVNHIGAIRTEHDDFTIRFASSMNQLVLLKSIDGADIEWCKDVKGNMYDMVVEGFQLLSRWTARIWEQCAWKFSHPCRDPVPTDSHETSLSFSDYEKVVRYNYSAEERKALVELVGYIKSIGSMMQRCDTLVADALWETIHTEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANTSKPESELQSSNHGGEESKGNFFYPRPVAPTTAQVFPHNLPAFSILFLMFNQVCSY
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K05749
CYFIP
RNA transport
map03013
Regulation of actin cytoskeleton
map04810
Gene Ontology
GO term
Ontology
Name
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
31.549
SRR3591706
second leaf
12.737
SRR3591707
mature leaf
8.150
SRR3591708
Shoot apex
11.574
SRR3591709
Stem
20.540
SRR3591710
White floral bud
12.149
SRR3591711
White flower
14.407
SRR3591712
Green floral bud
19.163
SRR3591713
Yellow flower
7.557
SRP173429
SRR8316895
Juvenile bud stage
9.555
SRR8316896
Juvenile bud stage
12.903
SRR8316897
Juvenile bud stage
7.068
SRR8316894
Third green stage
8.013
SRR8316900
Third green stage
18.217
SRR8316901
Third green stage
17.217
SRR8316898
Complete white stage
3.350
SRR8316899
Complete white stage
12.241
SRR8316903
Complete white stage
7.243
SRR8316902
Silver flowering stage
3.793
SRR8316904
Silver flowering stage
6.084
SRR8316905
Silver flowering stage
2.442
SRR8316906
Gold flowering stage
6.894
SRR8316907
Gold flowering stage
7.854
SRR8316908
Gold flowering stage
7.277
SRP132670
SRR6706286
Control
12.144
SRR6706287
Light intensity 50%
12.664
SRR6706288
Light intensity 20%
13.782
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
4.021
CNS0095593
Slightly white alabastrum(diploid) 2
2.808
CNS0095594
Slightly white alabastrum(diploid) 3
5.020
CNS0095595
Whole white alabastrum(diploid) 2
5.133
CNS0095596
Whole white alabastrum(diploid) 3
3.589
CNS0095597
Whole white alabastrum(diploid) 4
3.607
CNS0095598
Silvery flower (diploied) 1
7.100
CNS0095599
Silvery flower (diploied) 2
7.035
CNS0095600
Silvery flower (diploied) 3
13.936
CNS0095601
Golden flower (diploid) 1
3.723
CNS0095602
Golden flower (diploid) 2
12.727
CNS0095603
Golden flower (diploid) 3
12.982
CNS0095604
Slightly white alabastrum(tetraploid) 1
7.525
CNS0095605
Slightly white alabastrum(tetraploid) 2
5.868
CNS0095606
Slightly white alabastrum(tetraploid) 3
21.620
CNS0095607
Whole white alabastrum(tetraploid) 1
5.526
CNS0095608
Whole white alabastrum(tetraploid) 2
6.036
CNS0095609
Whole white alabastrum(tetraploid) 3
19.054
CNS0095610
Silvery flower (tetraploid) 1
10.276
CNS0095611
Silvery flower (tetraploid) 2
16.525
CNS0095612
Silvery flower (tetraploid) 3
11.776
CNS0095613
Golden flower (tetraploid) 1
2.668
CNS0095614
Golden flower (tetraploid) 2
7.742
CNS0095615
Golden flower (tetraploid) 3
12.293
CRA001975
CRR073297
Stem 1
15.200
CRR073298
Stem 2
13.822
CRR073299
Stem 3
11.372
CRR073300
Leaf 1
16.301
CRR073301
Leaf 2
11.977
CRR073302
Leaf 3
12.838
CRR073303
Juvenile bud 1
12.135
CRR073304
Juvenile bud 2
8.465
CRR073305
Juvenile bud 3
13.320
CRR073306
Third green 1
3.932
CRR073307
Third green 2
2.226
CRR073308
Third green 3
4.208
CRR073309
Second white 1
3.900
CRR073310
Second white 2
5.513
CRR073311
Second white 3
7.342
CRR073312
Silver flowering 1
4.794
CRR073313
Silver flowering 2
4.500
CRR073314
Silver flowering 3
4.645
CRR073315
Gold flowering 1
3.828
CRR073316
Gold flowering 2
6.927
CRR073317
Gold flowering 3
3.442
CRR073318
Tawny withering 1
5.008
CRR073319
Tawny withering 2
5.054
CRR073320
Tawny withering 3
7.037