Gene detail

Detail information of GWHGAAZE005219

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011077054.1	0	PREDICTED: histone-lysine N-methyltransferase SUVR1-like isoform X1 [Sesamum indicum]
Swissprot	tr\|Q8W595\|SUVR4_ARATH	2E-170	Histone-lysine N-methyltransferase SUVR4
trEMBL	tr\|A0A068U718\|A0A068U718_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_12 {ECO:0000313\|EMBL:CDP04281.1}
TAIR10	AT3G04380.2	2E-135	SET-domain containing protein lysine methyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	4470938	4476326	+
GWHAAZE00000002	mRNA	4470938	4476326	+
GWHAAZE00000002	exon	4470938	4471120	+
GWHAAZE00000002	exon	4471827	4472286	+
GWHAAZE00000002	exon	4472924	4473948	+
GWHAAZE00000002	exon	4474295	4474560	+
GWHAAZE00000002	exon	4475023	4475089	+
GWHAAZE00000002	exon	4475195	4475245	+
GWHAAZE00000002	exon	4476228	4476326	+
GWHAAZE00000002	CDS	4470938	4471120	+
GWHAAZE00000002	CDS	4471827	4472286	+
GWHAAZE00000002	CDS	4472924	4473948	+
GWHAAZE00000002	CDS	4474295	4474560	+
GWHAAZE00000002	CDS	4475023	4475089	+
GWHAAZE00000002	CDS	4475195	4475245	+
GWHAAZE00000002	CDS	4476228	4476326	+

Transcript Sequence
>GWHTAAZE005225 ATGGCAGTTGATCCAAAAGTTGCAAATGCCTTCCGGGCAATGAAGGCATTAGGAATTCCTCCAGAAACTGTGAAACCAGTCCTCAAGAATCTACTGAGACTGTACGATAAAAATTGGGAGCTTATTGAGGAGGATAATTATCGTACACTTGCTGATGCTATATTTGAATATGCAGAGGAGAAGATGAGGGAAGATATGGAGAAAGACACTTTGGAGTATGGCGAATCAGAAGCTCCATATAAAAAACGGCATTTGGTAAAGCAGGAAGATCAGGTTTCATCTACGCCGGATAGCGGAAGGACAATAATATGTATAGAAGAGAGTGAAATAAGACAGACATCCCCCTTACCAAAGTTTATGGAATCGTCTCCATGGTTAAGGGAATCGGGAACTGAACTGGGTTCTCATTCTCTTCGGACACCATCTAGTAACAAAGGGAAAGATCCCATCTCAGCAGAGACGGCCCATAAACGGAATAATTTAGCTTTGAAGAGAGCATCAAGTGCTGTTTATTCTAATCAGGTAGTGGGTGTGGGTCATATTCAGAGGGAAATGGTTCTTAAAGATTTTGCAGATGAAGAAAAAATGCAAGTGGTTGATGATTCGCCACAATTTGCTGTACCCTCTTTAGCGGTTGATTCAGCTCTTGCGGGTTCGTTGGAGGATTCAACTCGAAACGATTCTTCCAAGTATTTTATGTCCCACAATGCGGTTAAGGACAATAAAGATCATGGATCAGCATACAATTATGGAATTTCCCACGGAAGAAGTTTTGATATTGCTTCATCACCTTTAGGAGAGGTGAAGATTTGTTTGAACTGTAATTCTTCCCTTGGACAAACATCCTTCAATGCTCCACATTTAGATTCAGTTCTCAAGTCCTTAGAGGATAAATATCTGAGATCGTATAAAATTGTTGGACCCCAATTTTCTGTAGTGAAATTACTGAAAGAATTGTGTCAAAGTTACTTGGAAAAGGCTACTAATTCTATTGACAGATCTGAGAAAAATAGAATTTCTGCTGGTGATTGCTTGCGTCACTTTACGCTTCCTGAAGAGGAATCTCTGAGAGCTGATAATTGCAAAAGGGATATGAACATAACCGGGACTTCAAATTTACATAGTTTGGTAACTGCCCAGCATCAACCCTCTTCTTGTGATAAAAAGAAGCCCTTCCGTAAGATCAGTGACATAACAAAAGGAACAGAAAAGGTGCGAATTTCGTTGCTAGACGAAATTGGCAATGAGCATCTGCCAGATTTTGTTTACATACCAACAAATATGATATACCAAAATGCATTTGTGCATGTTTCACTGGCCCGGATTGCGGACGAGGATTGCTGTTCCAACTGTATGGGGGATTGTCTTTCATCATCAGTGCCTTGTGCATGTGCTCGTGATACTGGAGGCGAGTTTGCATACACACCACAGGGCCTGCTGAAACCTGAGTTTTTAAAAGCATATATTTCTATGAATCAAGAACCACAGAAGCACTACAACTTTTATTGTGAAGATTGCCCATTAGAGAGGGCTAAGAATATGTCCAGGCCTGAATCGTGCAAGGGTCATTTAGTGAGGAAATTTGTTAAAGAATGCTGGAGAAAGTGTGGTTGCGACATGCAGTGTGGGAACCGTGTTGTCCAGCGTGGTATTAGCTGCAAATTGCAGGTTTTCTTGACTAAAGACGGTAAAGGCTGGGGTCTTCGGGCACTTGAGGATTTGCCCAAAGGTGCTTTTGTCTGTGAATATATTGGAGAAATTCTGACCAATATGGAATTATATGAAAGGAACAAGCAAAGCAGTGGTTCTGAGAGACATACATACCCAGTGTTGCTTGATGCAGATTGGGGTTCTGAAGGAATTCTGAAGGATGAAGATGCGCTTTGCTTGGATGCCACACATTATGGAAATGTTGCAAGGTTTATAAATCATAGATGCTTTGATGCAAACTTGCTTGAAATTCCTGTTGAAGTGGAGGCCCCCGATCATCACTACTACCATCTTGCTTTTTTCACTAAGAGAAAAATTGGTGCTTTGGAAGAGCTCACATGGGATTATGGAATTGACTTTGATGATCATAATCATCCAATTAAGGCATTCCGATGTTGCTGCGCGAGTGCATTCTGTCGAGACAAGAAAAGAAGAGGTTAG

Network for GWHGAAZE005219

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10440.10	WIYLD	6	60	1.10E-21
PF05033.17	Pre-SET	398	545	1.50E-17
PF00856.29	SET	565	687	9.10E-19

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0034968	biological_process	histone lysine methylation
GO:0005634	cellular_component	nucleus
GO:0005515	molecular_function	protein binding
GO:0018024	molecular_function	histone-lysine N-methyltransferase activity
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.814
	SRR3591706	second leaf	0.819
	SRR3591707	mature leaf	0.667
	SRR3591708	Shoot apex	2.896
	SRR3591709	Stem	3.009
	SRR3591710	White floral bud	2.284
	SRR3591711	White flower	3.762
	SRR3591712	Green floral bud	7.645
	SRR3591713	Yellow flower	0.915
SRP173429	SRR8316895	Juvenile bud stage	4.774
	SRR8316896	Juvenile bud stage	3.822
	SRR8316897	Juvenile bud stage	3.214
	SRR8316894	Third green stage	1.287
	SRR8316900	Third green stage	3.058
	SRR8316901	Third green stage	2.594
	SRR8316898	Complete white stage	0.748
	SRR8316899	Complete white stage	5.061
	SRR8316903	Complete white stage	1.309
	SRR8316902	Silver flowering stage	1.587
	SRR8316904	Silver flowering stage	2.211
	SRR8316905	Silver flowering stage	0.709
	SRR8316906	Gold flowering stage	1.994
	SRR8316907	Gold flowering stage	2.341
	SRR8316908	Gold flowering stage	1.575
SRP132670	SRR6706286	Control	2.234
	SRR6706287	Light intensity 50%	2.461
	SRR6706288	Light intensity 20%	2.765
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.593
	CNS0095593	Slightly white alabastrum(diploid) 2	3.033
	CNS0095594	Slightly white alabastrum(diploid) 3	3.925
	CNS0095595	Whole white alabastrum(diploid) 2	3.043
	CNS0095596	Whole white alabastrum(diploid) 3	2.635
	CNS0095597	Whole white alabastrum(diploid) 4	1.986
	CNS0095598	Silvery flower (diploied) 1	5.060
	CNS0095599	Silvery flower (diploied) 2	5.275
	CNS0095600	Silvery flower (diploied) 3	2.955
	CNS0095601	Golden flower (diploid) 1	4.839
	CNS0095602	Golden flower (diploid) 2	5.766
	CNS0095603	Golden flower (diploid) 3	4.094
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.990
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.925
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.590
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.121
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.207
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.013
	CNS0095610	Silvery flower (tetraploid) 1	2.168
	CNS0095611	Silvery flower (tetraploid) 2	2.355
	CNS0095612	Silvery flower (tetraploid) 3	0.928
	CNS0095613	Golden flower (tetraploid) 1	0.700
	CNS0095614	Golden flower (tetraploid) 2	1.679
	CNS0095615	Golden flower (tetraploid) 3	0.475
CRA001975	CRR073297	Stem 1	4.847
	CRR073298	Stem 2	3.422
	CRR073299	Stem 3	2.841
	CRR073300	Leaf 1	2.559
	CRR073301	Leaf 2	2.709
	CRR073302	Leaf 3	1.868
	CRR073303	Juvenile bud 1	1.569
	CRR073304	Juvenile bud 2	0.393
	CRR073305	Juvenile bud 3	2.030
	CRR073306	Third green 1	0.550
	CRR073307	Third green 2	0.181
	CRR073308	Third green 3	0.455
	CRR073309	Second white 1	0.321
	CRR073310	Second white 2	0.552
	CRR073311	Second white 3	0.417
	CRR073312	Silver flowering 1	0.472
	CRR073313	Silver flowering 2	0.376
	CRR073314	Silver flowering 3	0.181
	CRR073315	Gold flowering 1	0.461
	CRR073316	Gold flowering 2	0.256
	CRR073317	Gold flowering 3	0.450
	CRR073318	Tawny withering 1	1.376
	CRR073319	Tawny withering 2	2.151
	CRR073320	Tawny withering 3	2.148