Gene detail

Detail information of GWHGAAZE005152

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010246734.1	0	PREDICTED: uncharacterized protein LOC104589948 [Nelumbo nucifera]
Swissprot	tr\|P42730\|CLPB1_ARATH	6E-14	Chaperone protein ClpB1
trEMBL	tr\|A0A068TVC0\|A0A068TVC0_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313\|EMBL:CDO99929.1}
TAIR10	AT3G52490.1	0	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	3473874	3476592	+
GWHAAZE00000002	mRNA	3473874	3476592	+
GWHAAZE00000002	exon	3473874	3475057	+
GWHAAZE00000002	exon	3475157	3475400	+
GWHAAZE00000002	exon	3475498	3476592	+
GWHAAZE00000002	CDS	3473874	3475057	+
GWHAAZE00000002	CDS	3475157	3475400	+
GWHAAZE00000002	CDS	3475498	3476592	+

Transcript Sequence
>GWHTAAZE005158 ATGAGAAGTGGAGGCTACACCGTCCACCACTCCCTCACTGCTGAAGCAGCAACCGTAGTAAAACAAGCCCTTAGCCTCGCTAAACGCCGAGGCCATGCTCAAGTAACTCCTCTCCATGTAGCCAGTGCTATGCTTTCTTCTTCAACTTGTCTTTTAAGAAAAGCTTGCCTTCAATCCCACTCTCATCCCCTTCAGTGCAAAGCCCTCGAGCTTTGCTTCAATGTGGCCCTAAACCGTCTCCCTACTTCAGCCTCGAGCCCACTTTTAGGCCCTCAATCCCACCACCCTTCTATGTCAAACTCCTTAGTCGCTGCTTTTAAACGTGCACAAGCTCACCAACGGCGCGGCACTGTTGAGAACCAGAACCAACCCATTTTAGCTCTAAAAGTAGAGATAGAACAGCTCATAATCTCCATTCTAGATGACCCTAGTGTTAGTAGAGTGATGAGAGAAGCTGGTTTCTCTAGTACACAAGTGAAAACAATTGTTGAACAAGCTGTTTCTTTGGAGATTTGCTCTCAAAGTCCTCAGTCCCAAGAAAACATCAAGCCTCAAGTATTTGGCACTAATGGGCCCCAGTTTCCTCCCATTAGTCATTTTAGAGTGTCTCTAGGCAAATCAAATGAGCGAGTAAAGAGTGAAGATGTAACGAGTGTTTTAGACACGATGATGAACAAGAAAAAGAAGAACACCGTTGTTGTAGGGGAGTGTTTGGCTAGCGCTGAGGGTGTGATTAGAGGAGTGATAGATAAGTTTGAGAGAGGAGATAATAATATTCATGGGGAGTTGAGGTTTGTGCAATTCATAAGTCTCCCTCTTTTCTCTTTGAGAAATCTGTCGAGGCAAGTGGTTGAAGAGAAGCTTGAGGAGCTTAGGTGCCTTGTTAAAAGCTATGTGAGCAGAGGGGTGGTTTTATATCTGGGTGACCTCAAATGGGTCGCTGAGTTTTGGTCGAATGGTGACCAAAGGAGTGGCTACTACTGTCCTGTGGAGCACATGATTATGGAGCTTAATAGACTGTTGTGTGGAATTGGGGAGAATGGAAAGTTGTGGCTAATGGGAATAGCCACTTTCAAGACTTACATGAGATGTAAATTGGGCCAGCCTTCTTTAGAGTCTCTATGGGAACTCTATCCTCTTACAATTCCTGTTGGAAGCTTGGAACTTAGTCTCAATCTTGAGAGTGATTTGCAAGATCAGTTTAAGAGCAAAGAATCGAGAGATGGGTCTAGTTGGCTTAATAAAACCAGAGTTGAGAAGCGCCTCACTTGCTGTGAAGATTGTTCTGCAAATTGTACTAGAGAAGCACGAAGTATCGCAATTATTGACCACAATAATGAGTCCACAACCACTTCCACCAGCTCAAGTTTGCCTTCATGGCTCCAACAGTACAAGGAAGAGAGCAAAAGGCATAACATCAATGATCAGGAATGTGATAAAGCAGGAAGCCTCTGCAAGAAATGGAACTCATTTTGCAGTTCTGTTCACAAACACCATCATTTTGCTTCTCCTCTTTCTTCCTCTACTTCAAAGTCTTCACAAGACCAAAGTTCCCCAAAGTTGCATCACAGCCTTCTAAATTGGCCAGTGATTTTCGAACCCAACAAGTCGCCTAAAGAACGCCAATTCTTTATATGTGAAAATGGAGATGAAGGTTTTCAACCCAATTTAAGGTCTACAAAACCTGACCTTTTATCCAATCCCAATTCTAGTCCTAACTCGGCTTCTTCTAGTGAGGCAAGTGAAGACATGAAGTGTTTGAATTTGTTCAAAGAACTCAATTCCAAGAATTTCAAGATTCTATGCAATGCATTGGAGAAAAAAGTTCCATGGCAGGGAATTATAATTCCCGAGATAGCAAGTACAATCCTTCGATGCAGGTCTGGAACGGTGAAAAGAAAGAAAGAATTTGAACACAAAAGGGACAAAGAAGAAACTTGGTTGTTCTTCTTAGGTGTAGATTGTGAAGGGAAAGAGAAGATAGCAAAAGAGATTGCTAAAAGTGTTTTTGGGTCTCAAAGTGATTTCATTGCAATTGGTCTAAGCAGCTTCTCATCAACTAGAGCTGATTCAACAGATCAAGAATTCAGCAACAAAAGAGCAAGAAACGAACACGGTCAAAGCTATATCGAGAGGTTTGCAGACGCAGTTCAAGATAATCCGAGCCGAGTGTTCTTCATGGAAGATGTTGAACAAGTTGACTACCATTCGCGAGTGGGCATAATGAACGCAATTGAAAGTGGAAGAATTAGTCTTCCTGGAGGCGAGTTTGTTCTTCTTAAGGACGCCATTGTCATTTTCAGTTGCGAAAGTTTCAGTTCCATGTCTAGAGCTTGTTCACCTCCCGTTAACAAGAAAGAAGAAGAGAATAATGTTGAAAAAACGGAGGAGAGAAGAGCAAGTCCTTCACTAGATTTGAATATGGCCACAGGCGACGATAATGAGGGTGGAATATCAGCTTCTGATATTGGGATTTTGGATTCAGTGGATCGGCAAGTTATTTTCAAAATTCAAATATTGTGA

Network for GWHGAAZE005152

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02861.21	Clp_N	23	48	0.0017
PF02861.21	Clp_N	130	167	0.26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0019538	biological_process	protein metabolic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.931
	SRR3591706	second leaf	3.578
	SRR3591707	mature leaf	0.539
	SRR3591708	Shoot apex	7.733
	SRR3591709	Stem	3.299
	SRR3591710	White floral bud	1.581
	SRR3591711	White flower	1.128
	SRR3591712	Green floral bud	2.383
	SRR3591713	Yellow flower	0.136
SRP173429	SRR8316895	Juvenile bud stage	2.170
	SRR8316896	Juvenile bud stage	1.840
	SRR8316897	Juvenile bud stage	0.635
	SRR8316894	Third green stage	1.195
	SRR8316900	Third green stage	0.312
	SRR8316901	Third green stage	0.741
	SRR8316898	Complete white stage	0.119
	SRR8316899	Complete white stage	1.362
	SRR8316903	Complete white stage	0.723
	SRR8316902	Silver flowering stage	0.056
	SRR8316904	Silver flowering stage	0.041
	SRR8316905	Silver flowering stage	0.102
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.067
	SRR8316908	Gold flowering stage	0.087
SRP132670	SRR6706286	Control	0.301
	SRR6706287	Light intensity 50%	0.233
	SRR6706288	Light intensity 20%	0.262
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.646
	CNS0095593	Slightly white alabastrum(diploid) 2	1.608
	CNS0095594	Slightly white alabastrum(diploid) 3	2.078
	CNS0095595	Whole white alabastrum(diploid) 2	0.797
	CNS0095596	Whole white alabastrum(diploid) 3	0.378
	CNS0095597	Whole white alabastrum(diploid) 4	0.533
	CNS0095598	Silvery flower (diploied) 1	1.332
	CNS0095599	Silvery flower (diploied) 2	0.972
	CNS0095600	Silvery flower (diploied) 3	0.752
	CNS0095601	Golden flower (diploid) 1	1.055
	CNS0095602	Golden flower (diploid) 2	1.285
	CNS0095603	Golden flower (diploid) 3	1.026
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.756
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.511
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.514
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.853
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.333
	CNS0095610	Silvery flower (tetraploid) 1	0.077
	CNS0095611	Silvery flower (tetraploid) 2	1.455
	CNS0095612	Silvery flower (tetraploid) 3	0.169
	CNS0095613	Golden flower (tetraploid) 1	0.045
	CNS0095614	Golden flower (tetraploid) 2	0.048
	CNS0095615	Golden flower (tetraploid) 3	0.269
CRA001975	CRR073297	Stem 1	3.802
	CRR073298	Stem 2	3.174
	CRR073299	Stem 3	4.116
	CRR073300	Leaf 1	0.776
	CRR073301	Leaf 2	0.936
	CRR073302	Leaf 3	0.909
	CRR073303	Juvenile bud 1	0.056
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.538
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.028
	CRR073309	Second white 1	0.016
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.101
	CRR073312	Silver flowering 1	0.370
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.782
	CRR073316	Gold flowering 2	0.870
	CRR073317	Gold flowering 3	0.819
	CRR073318	Tawny withering 1	2.137
	CRR073319	Tawny withering 2	1.792
	CRR073320	Tawny withering 3	2.015