Gene detail

Detail information of GWHGAAZE005097

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002268973.1	0	PREDICTED: uncharacterized protein LOC100260933 [Vitis vinifera]
Swissprot	tr\|Q9LJG8\|ASIL2_ARATH	2E-17	Trihelix transcription factor ASIL2 {ECO:0000305}
trEMBL	tr\|F6I5U8\|F6I5U8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB62316.1}
TAIR10	AT3G10030.1	1E-141	aspartate/glutamate/uridylate kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	2662431	2665369	+
GWHAAZE00000002	mRNA	2662431	2665369	+
GWHAAZE00000002	exon	2662431	2663005	+
GWHAAZE00000002	exon	2663433	2663565	+
GWHAAZE00000002	exon	2663676	2663729	+
GWHAAZE00000002	exon	2663837	2663928	+
GWHAAZE00000002	exon	2664185	2664420	+
GWHAAZE00000002	exon	2665006	2665179	+
GWHAAZE00000002	exon	2665272	2665369	+
GWHAAZE00000002	CDS	2662431	2663005	+
GWHAAZE00000002	CDS	2663433	2663565	+
GWHAAZE00000002	CDS	2663676	2663729	+
GWHAAZE00000002	CDS	2663837	2663928	+
GWHAAZE00000002	CDS	2664185	2664420	+
GWHAAZE00000002	CDS	2665006	2665179	+
GWHAAZE00000002	CDS	2665272	2665369	+

Transcript Sequence
>GWHTAAZE005103 ATGGCTTCGTGCAACGTTGATTTCCCACTCATCGACGACGGCAACAACGCCGACAATGGAGATACTCCCGGAAATTCCGTTACCGCCGCTTTCTATTCCCAAACTTCCGACGTAATACCGTACGCCGCCGATTCTTCCGATCCGAACAGATCCAGTCCGAGCACTCCTAATGGAAGGCGAAACCCTTACCATTACAAAAGGCTAAAAAAAGATGTTGCCGGAGATTCCACCGGAAGGGAATCTCGAGGTGACTACCGGAAGGACCGCGAGGAGTGGAGCGACTCGGCGATTGCGTGTCTCCTCGATGCGTATACGGAGAAGTTCACACAGTTGAGTAGAGGTAATTTACGGGGAAGAGATTGGGAGGAAGTGGCGGTAATTGTTAGTGCGGGTTGCGATAAAAAGTCACGTAAGAGTGTTGAGCAGTGTAAGAACAAGATTGATAATTTGAAGAAGAGGTATAAAGTTGAACTGCAGAGGATGAACAGTGGAGGGTTGACGGGTAGTCAATGGCATTGGTATAAGCAAATGGAGGTCATTGTTGGTAATGCCAATAGCGTTTCGGATGAGGATAGATTTACACCCAACAATGCTGCCCTAGGAACCAGCGTGAAATCTAAATCAATGCCAAACCCAAAATGGCGGAGAGTGGTGTTCAAAATCAGCGGCACCGCATTGGTCGGGAATTGTCAGAGTATTGACCCCAAGGTGGCATTACAAATTGCTAAAGAAGTAACATCAGCGTGCCGCCTTGGTGTAGAGGTGGCTATTGTTGTCGGAGGTCGTAACTTCTTTTGTGGAGACTCATGGGTAACGGCAACTGGTCTGGATAGACCTACAGCATACCAAATTGGTATGATGGCAACAGTAATGAATTCAGTACTGCTTCAATCAGCTATAGAGAAGTTGGGGGTTCAGACTCGTGTACAAAGTGCTTTTGCGATGCCAGAGGTAGCTGAACCATATAACAGGGTGAGGGCTATCCGTCATCTTGAGAAAGGAAGAGTTGTCATCTTTGGTGGCATTGGCGCTGGTACTGGGAATCCCCTCTTCTCAACTGATACGGCCGCAGCTTTAAGAGCTTCTGAGATCAATGCAGAGGCACTCCTTAAAGGTACAAATGTAAATGGCGTGTACGATCGCAGCTCTGGTGACACCAATCTGACAACACCTGAACATATTTCCTTCAGGGAGGTGGTTTCTAGAGGTGTGACCTCCATGGACATGATGTCAATACAATACTGTGAAGAGAATGGAATTCCTGTCGTTATCTTTAATTTGCTTGAGCCGGGAAACATTTCAAGATCATTGCGTGGGGACCAAGTTGGAACTTTGATTGATCAAACAGGAAAGATCAGCTAA

Network for GWHGAAZE005097

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13837.7	Myb_DNA-bind_4	89	178	6.60E-18
PF00696.29	AA_kinase	216	426	3.00E-22

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006221	biological_process	pyrimidine nucleotide biosynthetic process
GO:0005737	cellular_component	cytoplasm
GO:0033862	molecular_function	UMP kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.747
	SRR3591706	second leaf	5.229
	SRR3591707	mature leaf	5.244
	SRR3591708	Shoot apex	9.971
	SRR3591709	Stem	6.509
	SRR3591710	White floral bud	7.389
	SRR3591711	White flower	9.139
	SRR3591712	Green floral bud	8.410
	SRR3591713	Yellow flower	7.094
SRP173429	SRR8316895	Juvenile bud stage	7.571
	SRR8316896	Juvenile bud stage	10.110
	SRR8316897	Juvenile bud stage	4.885
	SRR8316894	Third green stage	3.555
	SRR8316900	Third green stage	9.987
	SRR8316901	Third green stage	9.155
	SRR8316898	Complete white stage	2.570
	SRR8316899	Complete white stage	15.820
	SRR8316903	Complete white stage	6.768
	SRR8316902	Silver flowering stage	1.718
	SRR8316904	Silver flowering stage	3.559
	SRR8316905	Silver flowering stage	1.683
	SRR8316906	Gold flowering stage	4.960
	SRR8316907	Gold flowering stage	4.498
	SRR8316908	Gold flowering stage	4.718
SRP132670	SRR6706286	Control	7.980
	SRR6706287	Light intensity 50%	7.527
	SRR6706288	Light intensity 20%	7.397
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.130
	CNS0095593	Slightly white alabastrum(diploid) 2	4.745
	CNS0095594	Slightly white alabastrum(diploid) 3	3.277
	CNS0095595	Whole white alabastrum(diploid) 2	3.674
	CNS0095596	Whole white alabastrum(diploid) 3	3.319
	CNS0095597	Whole white alabastrum(diploid) 4	3.593
	CNS0095598	Silvery flower (diploied) 1	5.708
	CNS0095599	Silvery flower (diploied) 2	4.021
	CNS0095600	Silvery flower (diploied) 3	6.823
	CNS0095601	Golden flower (diploid) 1	6.046
	CNS0095602	Golden flower (diploid) 2	8.092
	CNS0095603	Golden flower (diploid) 3	7.935
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.162
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.485
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.930
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.520
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.182
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.442
	CNS0095610	Silvery flower (tetraploid) 1	8.311
	CNS0095611	Silvery flower (tetraploid) 2	7.715
	CNS0095612	Silvery flower (tetraploid) 3	7.576
	CNS0095613	Golden flower (tetraploid) 1	4.997
	CNS0095614	Golden flower (tetraploid) 2	7.448
	CNS0095615	Golden flower (tetraploid) 3	4.187
CRA001975	CRR073297	Stem 1	5.813
	CRR073298	Stem 2	6.311
	CRR073299	Stem 3	5.949
	CRR073300	Leaf 1	8.462
	CRR073301	Leaf 2	7.111
	CRR073302	Leaf 3	4.838
	CRR073303	Juvenile bud 1	4.847
	CRR073304	Juvenile bud 2	2.879
	CRR073305	Juvenile bud 3	4.626
	CRR073306	Third green 1	1.294
	CRR073307	Third green 2	1.738
	CRR073308	Third green 3	2.288
	CRR073309	Second white 1	2.254
	CRR073310	Second white 2	1.926
	CRR073311	Second white 3	1.874
	CRR073312	Silver flowering 1	2.343
	CRR073313	Silver flowering 2	1.139
	CRR073314	Silver flowering 3	1.982
	CRR073315	Gold flowering 1	2.968
	CRR073316	Gold flowering 2	3.194
	CRR073317	Gold flowering 3	2.153
	CRR073318	Tawny withering 1	3.180
	CRR073319	Tawny withering 2	2.853
	CRR073320	Tawny withering 3	3.391