Gene detail

Detail information of GWHGAAZE005078

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009619467.1	0	PREDICTED: NAC domain-containing protein 78-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q84K00\|NAC78_ARATH	1E-81	NAC domain-containing protein 78
trEMBL	tr\|A0A068TWS9\|A0A068TWS9_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313\|EMBL:CDO99813.1}
TAIR10	AT3G10480.2	3E-78	NAC domain containing protein 50

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	2366506	2371530	+
GWHAAZE00000002	mRNA	2366506	2371530	+
GWHAAZE00000002	exon	2366506	2366713	+
GWHAAZE00000002	exon	2367318	2367595	+
GWHAAZE00000002	exon	2367738	2367890	+
GWHAAZE00000002	exon	2370979	2371530	+
GWHAAZE00000002	CDS	2366506	2366713	+
GWHAAZE00000002	CDS	2367318	2367595	+
GWHAAZE00000002	CDS	2367738	2367890	+
GWHAAZE00000002	CDS	2370979	2371530	+

Transcript Sequence
>GWHTAAZE005084 ATGGCTCACGAATTGGTGGCAGTAACTCCGTCGGTAAAATTACCGGCGGCGCCCCCGACCACGTCACTGGCGCCTGGGTTTCGGTTTCACCCAACGGATGAGGAACTCGTTAGGTATTACCTTAGGCGTAAGGCTTGTGGAAAGCCCTTCCGTTTCCAAGCCATCTCTGAAATTGATGTCTATAAGTCCGAGCCTTGGGACCTTCAAGGTTATTCATCTCTGAAGACCAGAGATCTGGAATGGTATTTCTTCAGCCCAGTAGATAGGAAGTATTGTAATGGGTCTCGATTGAACCGTGCTACTGGTAGAGGGTACTGGAAAGCAACAGGGAAGGATCGGGCTGTCCGTCATAAGGCTCAAACTATTGGTATGAAGAAAACACTAGTCTTCCATGGTGGACGGGCCCCTGATGGCAAGCGAACCAACTGGGTAATGCACGAGTATAGACTAACGGATGAAGAATTGGGGAGAGCAGGAGTTGCACAGAAGAGTGGTTTAGGGCCACCAAATGGAGATCGATATGCACCATTTCTTGATGAGGAATGGGATGATGATGCAGTTCTCTTTGTTCCTGGAGAGACTGAGGATGACATGGCCAATGGTGATGAAGCAAGGGTTGAAGGAAATGACCTTGAGCAGGATGCTCGGCCCAAGAAGGCTCCTCTCCACGGAAACCAGCCTCCAATCGACTCTCAACCTCTCCCACTCATTTGTAAGAGAGAAAGATCAGAGGATTGTGCTCTAAATTGCGAAGCTGATCTCGAACCCATTTCTTTCTTGCAAAGTAAAAGATCCAAACATAATGATAGTAATAATAATGATCCAAACTCCAGCAATAACAATGCAAATGGTTCTGAAGATTCAACTACAACAAGCCAGGACCCACCAGCAGCAGCACCCAAACGAACACTCTTGGAGTTCCCTTTGATAGACTGGATTGAACCCAAAGAGAATCATCACCCTGCTGCACCAACTACCGTGTGTACATTTGATGCTGCAAATCTCGAAAAGTCGGTGCCTCCAGGGTATTTGAAATTCATCAGCAACTTGGAGAACGAGATCCTTAATGTTTCAATGGAGCGAGAAACGTTAAAGATTGAAGTGATGAGGGCCCAAGCCATGATTAACGTCCTTCAGTCCCGTATCGATCTTTTGAGCAAAGAAAATGAGGATTTGAGAAGGTTCGCCTAG

Network for GWHGAAZE005078

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	25	150	9.00E-37

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.742
	SRR3591706	second leaf	18.659
	SRR3591707	mature leaf	12.155
	SRR3591708	Shoot apex	20.714
	SRR3591709	Stem	32.102
	SRR3591710	White floral bud	27.050
	SRR3591711	White flower	52.640
	SRR3591712	Green floral bud	13.374
	SRR3591713	Yellow flower	56.362
SRP173429	SRR8316895	Juvenile bud stage	11.961
	SRR8316896	Juvenile bud stage	14.624
	SRR8316897	Juvenile bud stage	5.747
	SRR8316894	Third green stage	5.562
	SRR8316900	Third green stage	12.130
	SRR8316901	Third green stage	12.122
	SRR8316898	Complete white stage	8.543
	SRR8316899	Complete white stage	15.130
	SRR8316903	Complete white stage	16.988
	SRR8316902	Silver flowering stage	19.271
	SRR8316904	Silver flowering stage	24.091
	SRR8316905	Silver flowering stage	13.033
	SRR8316906	Gold flowering stage	51.014
	SRR8316907	Gold flowering stage	51.644
	SRR8316908	Gold flowering stage	56.350
SRP132670	SRR6706286	Control	15.330
	SRR6706287	Light intensity 50%	12.253
	SRR6706288	Light intensity 20%	12.649
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.924
	CNS0095593	Slightly white alabastrum(diploid) 2	8.827
	CNS0095594	Slightly white alabastrum(diploid) 3	10.752
	CNS0095595	Whole white alabastrum(diploid) 2	8.369
	CNS0095596	Whole white alabastrum(diploid) 3	5.268
	CNS0095597	Whole white alabastrum(diploid) 4	5.926
	CNS0095598	Silvery flower (diploied) 1	15.763
	CNS0095599	Silvery flower (diploied) 2	12.574
	CNS0095600	Silvery flower (diploied) 3	37.985
	CNS0095601	Golden flower (diploid) 1	16.831
	CNS0095602	Golden flower (diploid) 2	42.085
	CNS0095603	Golden flower (diploid) 3	40.940
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.776
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.828
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.355
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.899
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.060
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.745
	CNS0095610	Silvery flower (tetraploid) 1	37.735
	CNS0095611	Silvery flower (tetraploid) 2	39.284
	CNS0095612	Silvery flower (tetraploid) 3	43.382
	CNS0095613	Golden flower (tetraploid) 1	37.367
	CNS0095614	Golden flower (tetraploid) 2	41.911
	CNS0095615	Golden flower (tetraploid) 3	61.016
CRA001975	CRR073297	Stem 1	26.629
	CRR073298	Stem 2	18.478
	CRR073299	Stem 3	21.960
	CRR073300	Leaf 1	15.797
	CRR073301	Leaf 2	16.608
	CRR073302	Leaf 3	14.578
	CRR073303	Juvenile bud 1	12.869
	CRR073304	Juvenile bud 2	14.710
	CRR073305	Juvenile bud 3	21.997
	CRR073306	Third green 1	25.699
	CRR073307	Third green 2	21.349
	CRR073308	Third green 3	24.275
	CRR073309	Second white 1	43.888
	CRR073310	Second white 2	34.891
	CRR073311	Second white 3	38.563
	CRR073312	Silver flowering 1	44.302
	CRR073313	Silver flowering 2	47.261
	CRR073314	Silver flowering 3	42.443
	CRR073315	Gold flowering 1	27.203
	CRR073316	Gold flowering 2	32.653
	CRR073317	Gold flowering 3	31.623
	CRR073318	Tawny withering 1	32.329
	CRR073319	Tawny withering 2	29.764
	CRR073320	Tawny withering 3	32.035