Detail information of GWHGAAZE005071


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007010024.10Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
Swissprottr|Q9SCP2|PLY12_ARATH3E-177Probable pectate lyase 12 (Precursor)
trEMBLtr|A0A061FND9|A0A061FND9_THECC0Pectate lyase {ECO:0000256|RuleBase:RU361123}
TAIR10AT5G04310.17E-141Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene22604552265585-
GWHAAZE00000002mRNA22604552265585-
GWHAAZE00000002exon22654492265585-
GWHAAZE00000002exon22644222265160-
GWHAAZE00000002exon22642982264323-
GWHAAZE00000002exon22641422264208-
GWHAAZE00000002exon22627382262943-
GWHAAZE00000002exon22604552260503-
GWHAAZE00000002CDS22654492265585-
GWHAAZE00000002CDS22644222265160-
GWHAAZE00000002CDS22642982264323-
GWHAAZE00000002CDS22641422264208-
GWHAAZE00000002CDS22627382262943-
GWHAAZE00000002CDS22604552260503-
Transcript Sequence

Network for GWHGAAZE005071

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00544.20Pectate_lyase_41612915.90E-12
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01728pel Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Quorum sensingmap02024

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.437
SRR3591706second leaf2.347
SRR3591707mature leaf1.386
SRR3591708Shoot apex2.957
SRR3591709Stem4.055
SRR3591710White floral bud13.677
SRR3591711White flower1.100
SRR3591712Green floral bud9.401
SRR3591713Yellow flower0.342
SRP173429 SRR8316895Juvenile bud stage 0.525
SRR8316896Juvenile bud stage 1.525
SRR8316897Juvenile bud stage 0.201
SRR8316894Third green stage 0.496
SRR8316900Third green stage 3.017
SRR8316901Third green stage 2.347
SRR8316898Complete white stage 2.934
SRR8316899Complete white stage 3.271
SRR8316903Complete white stage 5.885
SRR8316902Silver flowering stage0.136
SRR8316904Silver flowering stage1.541
SRR8316905Silver flowering stage0.497
SRR8316906Gold flowering stage 0.242
SRR8316907Gold flowering stage 0.353
SRR8316908Gold flowering stage 0.378
SRP132670SRR6706286Control3.569
SRR6706287Light intensity 50%3.789
SRR6706288Light intensity 20%2.729
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.510
CNS0095593Slightly white alabastrum(diploid) 23.492
CNS0095594Slightly white alabastrum(diploid) 32.177
CNS0095595Whole white alabastrum(diploid) 22.520
CNS0095596Whole white alabastrum(diploid) 31.897
CNS0095597Whole white alabastrum(diploid) 42.383
CNS0095598Silvery flower (diploied) 10.807
CNS0095599Silvery flower (diploied) 20.431
CNS0095600Silvery flower (diploied) 31.597
CNS0095601Golden flower (diploid) 10.524
CNS0095602Golden flower (diploid) 20.309
CNS0095603Golden flower (diploid) 30.489
CNS0095604Slightly white alabastrum(tetraploid) 11.520
CNS0095605Slightly white alabastrum(tetraploid) 21.022
CNS0095606Slightly white alabastrum(tetraploid) 31.675
CNS0095607Whole white alabastrum(tetraploid) 11.292
CNS0095608Whole white alabastrum(tetraploid) 21.132
CNS0095609Whole white alabastrum(tetraploid) 31.129
CNS0095610Silvery flower (tetraploid) 11.366
CNS0095611Silvery flower (tetraploid) 22.153
CNS0095612Silvery flower (tetraploid) 37.574
CNS0095613Golden flower (tetraploid) 10.148
CNS0095614Golden flower (tetraploid) 23.238
CNS0095615Golden flower (tetraploid) 30.703
CRA001975CRR073297Stem 12.403
CRR073298Stem 22.281
CRR073299Stem 32.128
CRR073300Leaf 17.132
CRR073301Leaf 26.646
CRR073302Leaf 33.453
CRR073303Juvenile bud 14.855
CRR073304Juvenile bud 26.108
CRR073305Juvenile bud 310.717
CRR073306Third green 15.445
CRR073307Third green 25.633
CRR073308Third green 35.789
CRR073309Second white 11.354
CRR073310Second white 21.133
CRR073311Second white 30.227
CRR073312Silver flowering 10.039
CRR073313Silver flowering 20.220
CRR073314Silver flowering 30.000
CRR073315Gold flowering 17.907
CRR073316Gold flowering 215.984
CRR073317Gold flowering 315.646
CRR073318Tawny withering 19.261
CRR073319Tawny withering 26.863
CRR073320Tawny withering 33.989