Gene detail

Detail information of GWHGAAZE005036

Functional Annotation

Database	Orthologs	Annotation
Nr	AEM63671.1	phenylalanine ammonia lyase 2 [Platycodon grandiflorus]
Swissprot	tr\|Q42667\|PALY_CITLI	Phenylalanine ammonia-lyase
trEMBL	tr\|J7ET89\|J7ET89_9ASTR	Phenylalanine ammonia-lyase {ECO:0000256\|RuleBase:RU003955}
TAIR10	AT2G37040.1	PHE ammonia lyase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	1673756	1678272	+
GWHAAZE00000002	mRNA	1673756	1678272	+
GWHAAZE00000002	exon	1673756	1674116	+
GWHAAZE00000002	exon	1676558	1678272	+
GWHAAZE00000002	CDS	1673756	1674116	+
GWHAAZE00000002	CDS	1676558	1678272	+

Transcript Sequence
>GWHTAAZE005042 ATGGATCATCTCGTTAACGGTAACAACGGCAATGTCGCGGTGGAGGGCTTATGTTTGGAGGATCCATTGAACTGGGGAATGGCGGCCGAGGCTCTTAAAGGCAGCCACCTAGACGAGGTGAAGAGAATGGTGGAGGAATACAGGAAGCCGGTGGTCCGGCTAGGTGGAGCTAGCCTTACCATAGCTCAAGTGGCTGCTATAGCCGCACGCGAGACGGAGGTGAAGGTTGAGCTATCGGAGTCGGCCAGGGCCGGGGTTAAGGCCAGCAGTGACTGGGTGATGGATAGCATGAATAAGGGTACTGATAGCTATGGTGTTACAACTGGCTTCGGTGCTACTTCTCATAGGAGGACCAAACAAGAATCGAGCCACACGCTGCCTCACTCCGCAACCAGAGCCTCTATGCTAGTGAGGATAAACACCCTTCTCCAAGGTTACTCGGGCATTAGATTTGAGATCTTGGAAGCCATCACCAACTTCCTTAACCATAACATCACCCCATGCCTGCCCCTCCGTGGCACCATCACTGCCTCGGGTGATCTGGTCCCTCTATCCTACATCGCTGGGCTTTTAACGGGCCGCCCCAACTCCAAGGCCACTGGGCCCAACGGTGAATCACTTGATGCTGCAGAGGCCTTCCGCCTTGCCGGTATCACCGCCGGCTTCTTTGAGTTGCAGCCCAAAGAAGGCCTTGCATTGGTGAATGGCACTGCCGTCGGTTCTGGCATGGCTTCCACCGTTCTTTTTGAAGCCAACATTCTAGCCGTCTTTTCCGAGGTTTTATCTGCACTTTTTGCTGAAGTTATGCAAGGGAAGCCTGAATTTACAGACCATTTGACCCACAAACTTAAGCATCATCCAGGCCAGATTGAGGCTGCAGCTATAATGGAACACATTTTGACCGGAAGCTCGTACGTTAAAGAAGCTGAGAAGATGCATGAAATGGATCCCCTTCAAAAGCCTAAACAAGATAGGTATGCCCTCCGAACATCGCCCCAATGGCTAGGTCCGCTTATTGAAGTCATCCGAACATCGACCAAATCCATTGAAAGGGAGATAAACTCCGTGAATGACAACCCTTTGATCGATGTTTCGAGGAATAAGGCCCTACATGGAGGAAACTTCCAAGGTACCCCAATTGGTGTCTCCATGGATAATACTCGCCTAGCCATAGGTTCGATTGGGAAACTCATGTTTGCACAATTTTCGGAGCTTGTAAATGACTTCTACAACAACGGGTTGCCTTCAAATCTGTCCGGGAGCCGTAATCCTAGCTTGGATTATGGGTTCAAAGGTGCCGAAATTGCAATGGCTTCTTATTGCTCTGAGCTCCAATTTCTGTCCAATCCGGTAACAAATCATGTCCAGAGTGCTGAGCAACATAACCAAGATGTGAACTCGTTGGGCTTGATTTCTTCAAGAAAGACAGCAGAATCTGTTGAGATATTAAAACTCATGACTTCCACTTACTTGGTTGCTCTATGCCAAGCCATTGATTTGAGGCATTTGGAGGAGAACATGAAGACCACAGTGAAGAACACAGTGAGTCAAGTGGCCAAGAAGGTCCTCACCATGGGTCAAAATGGAGAGCTGCACCCATCTAGGTTCTGCGAAAAAGACTTGCTCAAAGTGGTAGACCGAGAATATGTCTTGCACTACATTGACGACCCATGCAGTGCCACCTACCCATTAATGCAGAAGCTAAGGCAAGTCCTGGTTGACCACGCTTTGACCAATGGTGAAGCAGAGAAGAATGTAAGCACTTCCATATTCCAAAAGATCGGCTCCTTTGAGGATGAGCTGAAAGCCCTTCTGCCTAAAGAAGTAGAAAGTGCTAGATCTGATCTCGAGAGTGGCAAGGCAGCCATTCTCAACCGTATCAAGGACTGCAGGTCGTACCCGCTATACAAGTTTGTAAGAGAAGAATTGGGAGGTAGTTATCTAACAGGTGAGAAGGTCCGATCACCAGGGGAGGAGTTCGACAAGGTGTTCACGGCTATGTGTGAAGGTAAGTTGATTGATCCATTGCTGGATTGTTTGAAGGAGTGGAATGGAGCTCCTCTTCCTATTTGTTAG

Network for GWHGAAZE005036

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00221.20	Lyase_aromatic	59	512	2.60E-145

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10775	PAL	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylalanine metabolism	map00360
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006559	biological_process	L-phenylalanine catabolic process
GO:0005737	cellular_component	cytoplasm
GO:0003824	molecular_function	catalytic activity
GO:0016841	molecular_function	ammonia-lyase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	205.015
	SRR3591706	second leaf	284.923
	SRR3591707	mature leaf	117.409
	SRR3591708	Shoot apex	169.337
	SRR3591709	Stem	955.278
	SRR3591710	White floral bud	291.276
	SRR3591711	White flower	456.282
	SRR3591712	Green floral bud	121.365
	SRR3591713	Yellow flower	465.592
SRP173429	SRR8316895	Juvenile bud stage	134.826
	SRR8316896	Juvenile bud stage	72.141
	SRR8316897	Juvenile bud stage	39.797
	SRR8316894	Third green stage	28.568
	SRR8316900	Third green stage	53.091
	SRR8316901	Third green stage	92.204
	SRR8316898	Complete white stage	22.124
	SRR8316899	Complete white stage	116.576
	SRR8316903	Complete white stage	43.569
	SRR8316902	Silver flowering stage	163.992
	SRR8316904	Silver flowering stage	226.353
	SRR8316905	Silver flowering stage	132.174
	SRR8316906	Gold flowering stage	591.990
	SRR8316907	Gold flowering stage	655.261
	SRR8316908	Gold flowering stage	809.994
SRP132670	SRR6706286	Control	85.063
	SRR6706287	Light intensity 50%	104.108
	SRR6706288	Light intensity 20%	105.898
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	83.214
	CNS0095593	Slightly white alabastrum(diploid) 2	66.094
	CNS0095594	Slightly white alabastrum(diploid) 3	89.577
	CNS0095595	Whole white alabastrum(diploid) 2	60.068
	CNS0095596	Whole white alabastrum(diploid) 3	21.111
	CNS0095597	Whole white alabastrum(diploid) 4	88.939
	CNS0095598	Silvery flower (diploied) 1	167.926
	CNS0095599	Silvery flower (diploied) 2	196.660
	CNS0095600	Silvery flower (diploied) 3	100.093
	CNS0095601	Golden flower (diploid) 1	141.024
	CNS0095602	Golden flower (diploid) 2	181.710
	CNS0095603	Golden flower (diploid) 3	175.349
	CNS0095604	Slightly white alabastrum(tetraploid) 1	57.072
	CNS0095605	Slightly white alabastrum(tetraploid) 2	39.303
	CNS0095606	Slightly white alabastrum(tetraploid) 3	168.655
	CNS0095607	Whole white alabastrum(tetraploid) 1	57.125
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.756
	CNS0095609	Whole white alabastrum(tetraploid) 3	81.147
	CNS0095610	Silvery flower (tetraploid) 1	146.102
	CNS0095611	Silvery flower (tetraploid) 2	103.469
	CNS0095612	Silvery flower (tetraploid) 3	579.418
	CNS0095613	Golden flower (tetraploid) 1	180.899
	CNS0095614	Golden flower (tetraploid) 2	243.939
	CNS0095615	Golden flower (tetraploid) 3	261.962
CRA001975	CRR073297	Stem 1	218.128
	CRR073298	Stem 2	145.692
	CRR073299	Stem 3	156.462
	CRR073300	Leaf 1	90.314
	CRR073301	Leaf 2	131.437
	CRR073302	Leaf 3	99.271
	CRR073303	Juvenile bud 1	109.059
	CRR073304	Juvenile bud 2	136.033
	CRR073305	Juvenile bud 3	197.110
	CRR073306	Third green 1	1941.952
	CRR073307	Third green 2	1003.048
	CRR073308	Third green 3	1330.592
	CRR073309	Second white 1	3354.545
	CRR073310	Second white 2	2227.899
	CRR073311	Second white 3	2579.491
	CRR073312	Silver flowering 1	3019.879
	CRR073313	Silver flowering 2	3925.453
	CRR073314	Silver flowering 3	2595.954
	CRR073315	Gold flowering 1	188.173
	CRR073316	Gold flowering 2	251.724
	CRR073317	Gold flowering 3	241.937
	CRR073318	Tawny withering 1	343.336
	CRR073319	Tawny withering 2	460.087
	CRR073320	Tawny withering 3	366.685