Detail information of GWHGAAZE005024


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008383158.10PREDICTED: phosphoglycerate kinase, cytosolic [Malus domestica]
Swissprottr|Q42962|PGKY_TOBAC0Phosphoglycerate kinase, cytosolic
trEMBLtr|D2D2Z8|D2D2Z8_GOSHI0Phosphoglycerate kinase {ECO:0000256|RuleBase:RU000532}
TAIR10AT1G79550.20phosphoglycerate kinase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene14642181468509+
GWHAAZE00000002mRNA14642181468509+
GWHAAZE00000002exon14642181464412+
GWHAAZE00000002exon14655601465637+
GWHAAZE00000002exon14657511466011+
GWHAAZE00000002exon14668391467156+
GWHAAZE00000002exon14676441467802+
GWHAAZE00000002exon14679251468509+
GWHAAZE00000002CDS14642181464412+
GWHAAZE00000002CDS14655601465637+
GWHAAZE00000002CDS14657511466011+
GWHAAZE00000002CDS14668391467156+
GWHAAZE00000002CDS14676441467802+
GWHAAZE00000002CDS14679251468119+
GWHAAZE00000002three_prime_UTR14681201468509+
Transcript Sequence

Network for GWHGAAZE005024

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00162.20PGK113909.10E-169
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00927PGK, pgk Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Glycolysis / Gluconeogenesismap00010
Carbon fixation in photosynthetic organismsmap00710
HIF-1 signaling pathwaymap04066

Gene Ontology

GO term OntologyName
GO:0006096biological_processglycolytic process
GO:0004618molecular_functionphosphoglycerate kinase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf581.885
SRR3591706second leaf187.716
SRR3591707mature leaf138.644
SRR3591708Shoot apex310.728
SRR3591709Stem359.451
SRR3591710White floral bud494.480
SRR3591711White flower623.187
SRR3591712Green floral bud583.967
SRR3591713Yellow flower346.053
SRP173429 SRR8316895Juvenile bud stage 322.107
SRR8316896Juvenile bud stage 483.492
SRR8316897Juvenile bud stage 266.344
SRR8316894Third green stage 186.621
SRR8316900Third green stage 727.522
SRR8316901Third green stage 608.375
SRR8316898Complete white stage 237.337
SRR8316899Complete white stage 558.747
SRR8316903Complete white stage 328.654
SRR8316902Silver flowering stage246.849
SRR8316904Silver flowering stage271.106
SRR8316905Silver flowering stage142.190
SRR8316906Gold flowering stage 380.715
SRR8316907Gold flowering stage 456.422
SRR8316908Gold flowering stage 576.930
SRP132670SRR6706286Control564.575
SRR6706287Light intensity 50%562.506
SRR6706288Light intensity 20%603.530
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1503.863
CNS0095593Slightly white alabastrum(diploid) 2586.567
CNS0095594Slightly white alabastrum(diploid) 3466.042
CNS0095595Whole white alabastrum(diploid) 2513.639
CNS0095596Whole white alabastrum(diploid) 3568.607
CNS0095597Whole white alabastrum(diploid) 4418.732
CNS0095598Silvery flower (diploied) 1353.777
CNS0095599Silvery flower (diploied) 2412.982
CNS0095600Silvery flower (diploied) 3511.786
CNS0095601Golden flower (diploid) 1345.188
CNS0095602Golden flower (diploid) 2377.611
CNS0095603Golden flower (diploid) 3367.032
CNS0095604Slightly white alabastrum(tetraploid) 1680.860
CNS0095605Slightly white alabastrum(tetraploid) 2598.258
CNS0095606Slightly white alabastrum(tetraploid) 3807.771
CNS0095607Whole white alabastrum(tetraploid) 1489.600
CNS0095608Whole white alabastrum(tetraploid) 2493.457
CNS0095609Whole white alabastrum(tetraploid) 3759.961
CNS0095610Silvery flower (tetraploid) 1636.844
CNS0095611Silvery flower (tetraploid) 2561.538
CNS0095612Silvery flower (tetraploid) 3597.248
CNS0095613Golden flower (tetraploid) 1327.988
CNS0095614Golden flower (tetraploid) 2506.901
CNS0095615Golden flower (tetraploid) 3230.065
CRA001975CRR073297Stem 1413.745
CRR073298Stem 2417.968
CRR073299Stem 3472.011
CRR073300Leaf 1534.610
CRR073301Leaf 2576.802
CRR073302Leaf 3720.511
CRR073303Juvenile bud 1854.143
CRR073304Juvenile bud 2618.694
CRR073305Juvenile bud 3857.364
CRR073306Third green 1438.160
CRR073307Third green 2396.913
CRR073308Third green 3387.796
CRR073309Second white 1541.483
CRR073310Second white 2322.193
CRR073311Second white 3254.298
CRR073312Silver flowering 1284.006
CRR073313Silver flowering 2378.016
CRR073314Silver flowering 3304.887
CRR073315Gold flowering 1128.441
CRR073316Gold flowering 2136.042
CRR073317Gold flowering 3145.301
CRR073318Tawny withering 1438.679
CRR073319Tawny withering 2384.764
CRR073320Tawny withering 3472.740