Gene detail

Detail information of GWHGAAZE005023

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011095719.1	PREDICTED: phosphoglycerate kinase, chloroplastic [Sesamum indicum]
Swissprot	tr\|Q42961\|PGKH_TOBAC	Phosphoglycerate kinase, chloroplastic (Precursor)
trEMBL	tr\|B9HY29\|B9HY29_POPTR	Phosphoglycerate kinase {ECO:0000256\|RuleBase:RU000532}
TAIR10	AT3G12780.1	phosphoglycerate kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	1452268	1454991	+
GWHAAZE00000002	mRNA	1452268	1454991	+
GWHAAZE00000002	exon	1452268	1452705	+
GWHAAZE00000002	exon	1452948	1453025	+
GWHAAZE00000002	exon	1453157	1453401	+
GWHAAZE00000002	exon	1453540	1453594	+
GWHAAZE00000002	exon	1453683	1454000	+
GWHAAZE00000002	exon	1454124	1454282	+
GWHAAZE00000002	exon	1454782	1454991	+
GWHAAZE00000002	CDS	1452268	1452705	+
GWHAAZE00000002	CDS	1452948	1453025	+
GWHAAZE00000002	CDS	1453157	1453401	+
GWHAAZE00000002	CDS	1453540	1453594	+
GWHAAZE00000002	CDS	1453683	1454000	+
GWHAAZE00000002	CDS	1454124	1454282	+
GWHAAZE00000002	CDS	1454782	1454991	+

Transcript Sequence
>GWHTAAZE005029 ATGGCTTCCGCAGCAGCTCCCACATCCCTCTCTCGTATCCCCACAACTTCTTCTTCTTCTTCCTCCTCGATCTCCCGCTCACTCACACCCCCCAATGCACTATCCACCCGCTTTCTCCGCTCCCCCACGCTCCGCGGTCTCGGCTTTGTTGGCGCCGTCGCCGATCCCCTCCTCTCCCTCCACGTCGCCTCTAAACTCCGATCCCCCCTCAAAACCAGCGCAACACCGACTAGGGTGTCGGCTTCCACGGCGAAGAAGAGCGTGGGAGACCTGACTGGGGCGGACTTGAAAGGGAAAAAGGTGTTCGTGAGGGCCGACTTGAATGTCCCACTCGACGATAGCCAGAACATCACTGACGATACCAGAATTCGTGCTGCTATCCCTACCATCAAGCACCTCATCGCCAATGGCGCTAAGGTCATTCTTTCCAGTCATTTGGGACGACCCAAAGGTGTCACCCCAAAATTCAGCCTGGCACCTCTTGTGCCCAGACTATCTCAACTCCTTGGTATTCAGGTTGTCAAGGCTGACGACTGCATCGGTCCAGAGGTTGAAAAATTGGTGGCTTCACTTCCTGAAGGCGGAGTTCTTCTTCTTGAAAATGTCAGGTTCTACAAGGAGGAAGAGAAGAATGATCCTGAGTTCGCAGCAAAGCTTGCCTCGCTAGCAGATCTTTTCGTGAATGATGCTTTTGGGACTGCACACAGAGCGCATGCCTCCACTGAGGGGGTTACAAAGTTTTTGAAGCCATCTGTTGCCGGTCAACACTTTAAAACTGGAGTTGCCATAAGTGGGAAAGAGCCTGCTGGTCTGTTGGAATTGGACTATCTTGTTGGAGCAGTGTCCAGCCCAAAGAGGCCATTTGCTGCCATCGTGGGTGGTTCAAAAGTCTCATCCAAGATTGGTGTGATCGAGTCCCTTCTGGAGAAATGTGATATCTTGCTTTTGGGTGGAGGAATGATCTTCACATTCTACAAGGCACAAGGTCTACCTGTGGGAGCTTCTCTAGTAGAAGAAGACAAGCTTGAACTTGCAACAACACTCCTTGCGAAAGCCAAGGCCAAAGGAGTTTCTCTTTTGTTACCGACAGATGTGATAGTGGCAGACAAGTTTGCACCCGATGCAAACAGCAAGATTGTGCCAGCTTCTGGTATCCCAGATGGTTGGATGGGATTGGATATTGGACCAGATTCGGTCAAGACATTCAACGAGGCCTTGGACACTACAAAGACTATTATTTGGAATGGACCAATGGGAGTTTTTGAATTTGAAAAGTTTGCAGTCGGAACAGAGTCAATCGCAAAGAAGCTTGCTGAACTCAGCGGGAAGGGAGTGACAACAATCATCGGAGGTGGAGATTCTGTTGCAGCTGTAGAGAAAGTAGGAGTTGCAGAAGTGATGAGCCACATATCAACAGGTGGTGGTGCCAGTTTGGAGTTGTTGGAGGGCAAAGAGCTCCCCGGTGTTGTTGCCCTTGATGAAGTCACACCGGTTCCCGTGTAA

Network for GWHGAAZE005023

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00162.20	PGK	94	484	3.00E-152

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00927	PGK, pgk	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Carbon fixation in photosynthetic organisms	map00710
		HIF-1 signaling pathway	map04066

Gene Ontology

GO term	Ontology	Name
GO:0006096	biological_process	glycolytic process
GO:0004618	molecular_function	phosphoglycerate kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	196.992
	SRR3591706	second leaf	1093.267
	SRR3591707	mature leaf	761.554
	SRR3591708	Shoot apex	329.338
	SRR3591709	Stem	103.196
	SRR3591710	White floral bud	51.536
	SRR3591711	White flower	32.570
	SRR3591712	Green floral bud	75.200
	SRR3591713	Yellow flower	8.560
SRP173429	SRR8316895	Juvenile bud stage	124.252
	SRR8316896	Juvenile bud stage	105.298
	SRR8316897	Juvenile bud stage	74.957
	SRR8316894	Third green stage	45.450
	SRR8316900	Third green stage	116.181
	SRR8316901	Third green stage	96.493
	SRR8316898	Complete white stage	14.918
	SRR8316899	Complete white stage	74.583
	SRR8316903	Complete white stage	28.207
	SRR8316902	Silver flowering stage	5.034
	SRR8316904	Silver flowering stage	7.056
	SRR8316905	Silver flowering stage	2.398
	SRR8316906	Gold flowering stage	6.087
	SRR8316907	Gold flowering stage	8.169
	SRR8316908	Gold flowering stage	12.522
SRP132670	SRR6706286	Control	127.965
	SRR6706287	Light intensity 50%	124.582
	SRR6706288	Light intensity 20%	137.009
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	86.811
	CNS0095593	Slightly white alabastrum(diploid) 2	74.955
	CNS0095594	Slightly white alabastrum(diploid) 3	66.002
	CNS0095595	Whole white alabastrum(diploid) 2	62.832
	CNS0095596	Whole white alabastrum(diploid) 3	49.931
	CNS0095597	Whole white alabastrum(diploid) 4	48.162
	CNS0095598	Silvery flower (diploied) 1	116.143
	CNS0095599	Silvery flower (diploied) 2	116.461
	CNS0095600	Silvery flower (diploied) 3	43.348
	CNS0095601	Golden flower (diploid) 1	85.827
	CNS0095602	Golden flower (diploid) 2	60.075
	CNS0095603	Golden flower (diploid) 3	56.206
	CNS0095604	Slightly white alabastrum(tetraploid) 1	76.244
	CNS0095605	Slightly white alabastrum(tetraploid) 2	77.422
	CNS0095606	Slightly white alabastrum(tetraploid) 3	135.678
	CNS0095607	Whole white alabastrum(tetraploid) 1	41.006
	CNS0095608	Whole white alabastrum(tetraploid) 2	37.367
	CNS0095609	Whole white alabastrum(tetraploid) 3	93.579
	CNS0095610	Silvery flower (tetraploid) 1	47.726
	CNS0095611	Silvery flower (tetraploid) 2	67.405
	CNS0095612	Silvery flower (tetraploid) 3	40.052
	CNS0095613	Golden flower (tetraploid) 1	13.802
	CNS0095614	Golden flower (tetraploid) 2	33.169
	CNS0095615	Golden flower (tetraploid) 3	6.666
CRA001975	CRR073297	Stem 1	297.789
	CRR073298	Stem 2	252.057
	CRR073299	Stem 3	332.902
	CRR073300	Leaf 1	123.893
	CRR073301	Leaf 2	151.782
	CRR073302	Leaf 3	116.471
	CRR073303	Juvenile bud 1	126.293
	CRR073304	Juvenile bud 2	88.235
	CRR073305	Juvenile bud 3	179.707
	CRR073306	Third green 1	12.601
	CRR073307	Third green 2	10.009
	CRR073308	Third green 3	16.635
	CRR073309	Second white 1	10.951
	CRR073310	Second white 2	4.824
	CRR073311	Second white 3	2.209
	CRR073312	Silver flowering 1	0.894
	CRR073313	Silver flowering 2	6.809
	CRR073314	Silver flowering 3	7.131
	CRR073315	Gold flowering 1	1314.559
	CRR073316	Gold flowering 2	1490.554
	CRR073317	Gold flowering 3	1304.711
	CRR073318	Tawny withering 1	171.476
	CRR073319	Tawny withering 2	137.877
	CRR073320	Tawny withering 3	175.361