Detail information of GWHGAAZE005020


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003632252.10PREDICTED: nuclear cap-binding protein subunit 1 [Vitis vinifera]
Swissprottr|Q9SIU2|NCBP1_ARATH0Nuclear cap-binding protein subunit 1
trEMBLtr|D7T129|D7T129_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI24208.3}
TAIR10AT2G13540.11E-162ARM repeat superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene13959411404897-
GWHAAZE00000002mRNA13959411404897-
GWHAAZE00000002exon14048351404897-
GWHAAZE00000002exon14038071403875-
GWHAAZE00000002exon14035281403646-
GWHAAZE00000002exon14028921402929-
GWHAAZE00000002exon14003211400459-
GWHAAZE00000002exon13996271399765-
GWHAAZE00000002exon13983271398821-
GWHAAZE00000002exon13977521398051-
GWHAAZE00000002exon13968351397007-
GWHAAZE00000002exon13965801396691-
GWHAAZE00000002exon13959411396039-
GWHAAZE00000002CDS14048351404897-
GWHAAZE00000002CDS14038071403875-
GWHAAZE00000002CDS14035281403646-
GWHAAZE00000002CDS14028921402929-
GWHAAZE00000002CDS14003211400459-
GWHAAZE00000002CDS13996271399765-
GWHAAZE00000002CDS13983271398821-
GWHAAZE00000002CDS13977521398051-
GWHAAZE00000002CDS13968351397007-
GWHAAZE00000002CDS13965801396691-
GWHAAZE00000002CDS13959411396039-
Transcript Sequence

Network for GWHGAAZE005020

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF09088.12MIF4G_like9861.20E-16
PF09088.12MIF4G_like1381911.80E-12
PF09090.12MIF4G_like_22564752.70E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12882NCBP1, CBP80 Spliceosome map03040
RNA transportmap03013
mRNA surveillance pathwaymap03015

Gene Ontology

GO term OntologyName
GO:0016070biological_processRNA metabolic process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf37.054
SRR3591706second leaf24.188
SRR3591707mature leaf16.952
SRR3591708Shoot apex46.880
SRR3591709Stem28.197
SRR3591710White floral bud34.640
SRR3591711White flower36.733
SRR3591712Green floral bud36.737
SRR3591713Yellow flower31.354
SRP173429 SRR8316895Juvenile bud stage 21.752
SRR8316896Juvenile bud stage 31.804
SRR8316897Juvenile bud stage 18.209
SRR8316894Third green stage 13.669
SRR8316900Third green stage 34.632
SRR8316901Third green stage 31.962
SRR8316898Complete white stage 9.925
SRR8316899Complete white stage 30.097
SRR8316903Complete white stage 18.600
SRR8316902Silver flowering stage11.990
SRR8316904Silver flowering stage17.114
SRR8316905Silver flowering stage7.417
SRR8316906Gold flowering stage 26.244
SRR8316907Gold flowering stage 27.582
SRR8316908Gold flowering stage 26.905
SRP132670SRR6706286Control10.217
SRR6706287Light intensity 50%10.537
SRR6706288Light intensity 20%13.260
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.638
CNS0095593Slightly white alabastrum(diploid) 217.479
CNS0095594Slightly white alabastrum(diploid) 319.980
CNS0095595Whole white alabastrum(diploid) 218.450
CNS0095596Whole white alabastrum(diploid) 317.009
CNS0095597Whole white alabastrum(diploid) 416.695
CNS0095598Silvery flower (diploied) 121.370
CNS0095599Silvery flower (diploied) 216.855
CNS0095600Silvery flower (diploied) 324.698
CNS0095601Golden flower (diploid) 118.133
CNS0095602Golden flower (diploid) 224.269
CNS0095603Golden flower (diploid) 323.339
CNS0095604Slightly white alabastrum(tetraploid) 123.606
CNS0095605Slightly white alabastrum(tetraploid) 219.063
CNS0095606Slightly white alabastrum(tetraploid) 335.937
CNS0095607Whole white alabastrum(tetraploid) 114.253
CNS0095608Whole white alabastrum(tetraploid) 213.936
CNS0095609Whole white alabastrum(tetraploid) 330.169
CNS0095610Silvery flower (tetraploid) 129.190
CNS0095611Silvery flower (tetraploid) 230.072
CNS0095612Silvery flower (tetraploid) 327.038
CNS0095613Golden flower (tetraploid) 115.680
CNS0095614Golden flower (tetraploid) 223.701
CNS0095615Golden flower (tetraploid) 320.261
CRA001975CRR073297Stem 129.063
CRR073298Stem 227.242
CRR073299Stem 323.904
CRR073300Leaf 130.271
CRR073301Leaf 223.882
CRR073302Leaf 325.263
CRR073303Juvenile bud 124.888
CRR073304Juvenile bud 218.469
CRR073305Juvenile bud 324.186
CRR073306Third green 17.206
CRR073307Third green 25.778
CRR073308Third green 37.991
CRR073309Second white 114.634
CRR073310Second white 215.446
CRR073311Second white 313.658
CRR073312Silver flowering 114.730
CRR073313Silver flowering 217.022
CRR073314Silver flowering 313.189
CRR073315Gold flowering 115.821
CRR073316Gold flowering 221.416
CRR073317Gold flowering 315.833
CRR073318Tawny withering 121.694
CRR073319Tawny withering 214.808
CRR073320Tawny withering 319.232