Detail information of GWHGAAZE004992


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010092481.11.4599E-102Succinate-semialdehyde dehydrogenase [Morus notabilis]
Swissprottr|Q9SAK4|SSDH_ARATH4E-98Succinate-semialdehyde dehydrogenase, mitochondrial (Precursor)
trEMBLtr|W9QR14|W9QR14_9ROSA5E-103Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:EXB51247.1}
TAIR10AT1G79440.19E-82aldehyde dehydrogenase 5F1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene909807919450-
GWHAAZE00000002mRNA909807919450-
GWHAAZE00000002exon919322919450-
GWHAAZE00000002exon919000919032-
GWHAAZE00000002exon918868918900-
GWHAAZE00000002exon912668912768-
GWHAAZE00000002exon911559911644-
GWHAAZE00000002exon911244911350-
GWHAAZE00000002exon911077911154-
GWHAAZE00000002exon909807909947-
GWHAAZE00000002CDS919322919450-
GWHAAZE00000002CDS919000919032-
GWHAAZE00000002CDS918868918900-
GWHAAZE00000002CDS912668912768-
GWHAAZE00000002CDS911559911644-
GWHAAZE00000002CDS911244911350-
GWHAAZE00000002CDS911077911154-
GWHAAZE00000002CDS909807909947-
Transcript Sequence

Network for GWHGAAZE004992

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0050GO:0009089 lysine biosynthetic process via diaminopimelate GOslim:biological_process
GO:0008840 4-hydroxy-tetrahydrodipicolinate synthase activity GOslim:molecular_function
map00261 Monobactam biosynthesis
map00300 Lysine biosynthesis
map00650 Butanoate metabolism
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GOslim:molecular_function
map00250 Alanine, aspartate and glutamate metabolism
GO:0016829 lyase activity GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00171.23Aldedh151907.70E-62
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K17761SSADH Metabolic pathways map01100
Butanoate metabolismmap00650
Alanine, aspartate and glutamate metabolismmap00250

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016491molecular_functionoxidoreductase activity
GO:0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf40.891
SRR3591706second leaf29.144
SRR3591707mature leaf29.143
SRR3591708Shoot apex40.890
SRR3591709Stem40.971
SRR3591710White floral bud37.628
SRR3591711White flower38.700
SRR3591712Green floral bud67.889
SRR3591713Yellow flower34.856
SRP173429 SRR8316895Juvenile bud stage 37.748
SRR8316896Juvenile bud stage 47.777
SRR8316897Juvenile bud stage 23.162
SRR8316894Third green stage 23.122
SRR8316900Third green stage 76.906
SRR8316901Third green stage 72.107
SRR8316898Complete white stage 24.885
SRR8316899Complete white stage 75.094
SRR8316903Complete white stage 32.876
SRR8316902Silver flowering stage17.587
SRR8316904Silver flowering stage22.102
SRR8316905Silver flowering stage10.694
SRR8316906Gold flowering stage 42.154
SRR8316907Gold flowering stage 44.636
SRR8316908Gold flowering stage 49.138
SRP132670SRR6706286Control71.621
SRR6706287Light intensity 50%76.642
SRR6706288Light intensity 20%75.205
CNP0000432CNS0095592Slightly white alabastrum(diploid) 149.074
CNS0095593Slightly white alabastrum(diploid) 260.016
CNS0095594Slightly white alabastrum(diploid) 343.811
CNS0095595Whole white alabastrum(diploid) 258.918
CNS0095596Whole white alabastrum(diploid) 363.188
CNS0095597Whole white alabastrum(diploid) 458.201
CNS0095598Silvery flower (diploied) 136.550
CNS0095599Silvery flower (diploied) 241.755
CNS0095600Silvery flower (diploied) 357.087
CNS0095601Golden flower (diploid) 143.591
CNS0095602Golden flower (diploid) 253.840
CNS0095603Golden flower (diploid) 349.388
CNS0095604Slightly white alabastrum(tetraploid) 171.998
CNS0095605Slightly white alabastrum(tetraploid) 261.210
CNS0095606Slightly white alabastrum(tetraploid) 380.243
CNS0095607Whole white alabastrum(tetraploid) 164.224
CNS0095608Whole white alabastrum(tetraploid) 264.046
CNS0095609Whole white alabastrum(tetraploid) 381.769
CNS0095610Silvery flower (tetraploid) 147.529
CNS0095611Silvery flower (tetraploid) 265.092
CNS0095612Silvery flower (tetraploid) 351.439
CNS0095613Golden flower (tetraploid) 142.291
CNS0095614Golden flower (tetraploid) 243.884
CNS0095615Golden flower (tetraploid) 352.936
CRA001975CRR073297Stem 139.955
CRR073298Stem 239.021
CRR073299Stem 344.061
CRR073300Leaf 152.713
CRR073301Leaf 253.755
CRR073302Leaf 357.350
CRR073303Juvenile bud 165.242
CRR073304Juvenile bud 256.715
CRR073305Juvenile bud 375.460
CRR073306Third green 129.730
CRR073307Third green 221.415
CRR073308Third green 326.761
CRR073309Second white 141.856
CRR073310Second white 220.079
CRR073311Second white 323.885
CRR073312Silver flowering 123.701
CRR073313Silver flowering 224.675
CRR073314Silver flowering 319.941
CRR073315Gold flowering 129.845
CRR073316Gold flowering 232.647
CRR073317Gold flowering 325.002
CRR073318Tawny withering 128.638
CRR073319Tawny withering 228.503
CRR073320Tawny withering 333.870