Detail information of GWHGAAZE004940


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009617774.12.11362E-81PREDICTED: phosphoglycolate phosphatase 2 [Nicotiana tomentosiformis]
Swissprottr|Q8GWU0|PGP2_ARATH4E-78Phosphoglycolate phosphatase 2
trEMBLtr|V4UGC8|V4UGC8_9ROSI3E-81Uncharacterized protein {ECO:0000313|EMBL:ESR63240.1}
TAIR10AT5G47760.12E-572-phosphoglycolate phosphatase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene124800681124815544-
GWHAAZE00000001mRNA124800681124815544-
GWHAAZE00000001exon124815431124815544-
GWHAAZE00000001exon124815222124815275-
GWHAAZE00000001exon124815045124815137-
GWHAAZE00000001exon124814864124814935-
GWHAAZE00000001exon124808897124808968-
GWHAAZE00000001exon124808392124808484-
GWHAAZE00000001exon124800681124800821-
GWHAAZE00000001CDS124815431124815544-
GWHAAZE00000001CDS124815222124815275-
GWHAAZE00000001CDS124815045124815137-
GWHAAZE00000001CDS124814864124814935-
GWHAAZE00000001CDS124808897124808968-
GWHAAZE00000001CDS124808392124808484-
GWHAAZE00000001CDS124800681124800821-
Transcript Sequence

Network for GWHGAAZE004940

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13344.7Hydrolase_6291304.30E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K19269PGP, PGLP Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Carbon metabolismmap01200
Glyoxylate and dicarboxylate metabolismmap00630

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf18.964
SRR3591706second leaf8.662
SRR3591707mature leaf9.425
SRR3591708Shoot apex14.688
SRR3591709Stem26.354
SRR3591710White floral bud23.516
SRR3591711White flower32.541
SRR3591712Green floral bud18.229
SRR3591713Yellow flower28.250
SRP173429 SRR8316895Juvenile bud stage 15.016
SRR8316896Juvenile bud stage 20.253
SRR8316897Juvenile bud stage 8.362
SRR8316894Third green stage 8.798
SRR8316900Third green stage 20.646
SRR8316901Third green stage 24.220
SRR8316898Complete white stage 15.391
SRR8316899Complete white stage 32.270
SRR8316903Complete white stage 23.795
SRR8316902Silver flowering stage16.188
SRR8316904Silver flowering stage25.649
SRR8316905Silver flowering stage8.336
SRR8316906Gold flowering stage 39.378
SRR8316907Gold flowering stage 36.743
SRR8316908Gold flowering stage 31.715
SRP132670SRR6706286Control24.336
SRR6706287Light intensity 50%31.147
SRR6706288Light intensity 20%33.588
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.911
CNS0095593Slightly white alabastrum(diploid) 213.644
CNS0095594Slightly white alabastrum(diploid) 313.099
CNS0095595Whole white alabastrum(diploid) 214.249
CNS0095596Whole white alabastrum(diploid) 311.895
CNS0095597Whole white alabastrum(diploid) 415.049
CNS0095598Silvery flower (diploied) 111.062
CNS0095599Silvery flower (diploied) 210.968
CNS0095600Silvery flower (diploied) 326.355
CNS0095601Golden flower (diploid) 114.030
CNS0095602Golden flower (diploid) 218.665
CNS0095603Golden flower (diploid) 323.089
CNS0095604Slightly white alabastrum(tetraploid) 115.303
CNS0095605Slightly white alabastrum(tetraploid) 211.174
CNS0095606Slightly white alabastrum(tetraploid) 319.007
CNS0095607Whole white alabastrum(tetraploid) 110.667
CNS0095608Whole white alabastrum(tetraploid) 29.620
CNS0095609Whole white alabastrum(tetraploid) 315.715
CNS0095610Silvery flower (tetraploid) 124.594
CNS0095611Silvery flower (tetraploid) 223.329
CNS0095612Silvery flower (tetraploid) 327.766
CNS0095613Golden flower (tetraploid) 117.519
CNS0095614Golden flower (tetraploid) 220.766
CNS0095615Golden flower (tetraploid) 324.197
CRA001975CRR073297Stem 122.838
CRR073298Stem 225.166
CRR073299Stem 322.896
CRR073300Leaf 130.930
CRR073301Leaf 224.655
CRR073302Leaf 325.912
CRR073303Juvenile bud 125.997
CRR073304Juvenile bud 233.275
CRR073305Juvenile bud 321.346
CRR073306Third green 129.800
CRR073307Third green 230.469
CRR073308Third green 330.142
CRR073309Second white 133.730
CRR073310Second white 244.426
CRR073311Second white 336.034
CRR073312Silver flowering 119.722
CRR073313Silver flowering 223.267
CRR073314Silver flowering 318.719
CRR073315Gold flowering 115.938
CRR073316Gold flowering 221.298
CRR073317Gold flowering 313.411
CRR073318Tawny withering 120.605
CRR073319Tawny withering 215.947
CRR073320Tawny withering 325.878