Detail information of GWHGAAZE004883


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002270330.20PREDICTED: E3 ubiquitin-protein ligase COP1-like [Vitis vinifera]
Swissprottr|P43254|COP1_ARATH0E3 ubiquitin-protein ligase COP1
trEMBLtr|A0A061GI38|A0A061GI38_THECC0Transducin/WD40 repeat-like superfamily protein isoform 1 {ECO:0000313|EMBL:EOY28832.1}
TAIR10AT2G32950.10Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene123766346123774231-
GWHAAZE00000001mRNA123766346123774231-
GWHAAZE00000001exon123766346123766519-
GWHAAZE00000001exon123766617123766727-
GWHAAZE00000001exon123766816123766995-
GWHAAZE00000001exon123767099123767203-
GWHAAZE00000001exon123767449123767547-
GWHAAZE00000001exon123767652123767807-
GWHAAZE00000001exon123769807123769885-
GWHAAZE00000001exon123770188123770253-
GWHAAZE00000001exon123770414123770571-
GWHAAZE00000001exon123770717123771076-
GWHAAZE00000001exon123771809123771964-
GWHAAZE00000001exon123772683123772760-
GWHAAZE00000001exon123773920123774231-
GWHAAZE00000001CDS123773920123774231-
GWHAAZE00000001CDS123772683123772760-
GWHAAZE00000001CDS123771809123771964-
GWHAAZE00000001CDS123770717123771076-
GWHAAZE00000001CDS123770414123770571-
GWHAAZE00000001CDS123770188123770253-
GWHAAZE00000001CDS123769807123769885-
GWHAAZE00000001CDS123767652123767807-
GWHAAZE00000001CDS123767449123767547-
GWHAAZE00000001CDS123767099123767203-
GWHAAZE00000001CDS123766816123766995-
GWHAAZE00000001CDS123766617123766727-
GWHAAZE00000001CDS123766346123766519-
Transcript Sequence

Network for GWHGAAZE004883

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13923.7zf-C3HC4_250873.80E-09
PF00400.33WD404554920.013
PF00400.33WD405415771.80E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
K10143RFWD2, COP1 Ubiquitin mediated proteolysis map04120
p53 signaling pathwaymap04115
Circadian rhythm - plantmap04712

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf31.072
SRR3591706second leaf33.701
SRR3591707mature leaf50.113
SRR3591708Shoot apex28.202
SRR3591709Stem39.660
SRR3591710White floral bud16.828
SRR3591711White flower25.278
SRR3591712Green floral bud17.735
SRR3591713Yellow flower15.123
SRP173429 SRR8316895Juvenile bud stage 27.357
SRR8316896Juvenile bud stage 40.534
SRR8316897Juvenile bud stage 17.390
SRR8316894Third green stage 14.343
SRR8316900Third green stage 22.343
SRR8316901Third green stage 28.035
SRR8316898Complete white stage 8.825
SRR8316899Complete white stage 35.423
SRR8316903Complete white stage 16.311
SRR8316902Silver flowering stage12.122
SRR8316904Silver flowering stage19.457
SRR8316905Silver flowering stage8.217
SRR8316906Gold flowering stage 18.637
SRR8316907Gold flowering stage 16.406
SRR8316908Gold flowering stage 19.094
SRP132670SRR6706286Control26.805
SRR6706287Light intensity 50%27.325
SRR6706288Light intensity 20%25.918
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.604
CNS0095593Slightly white alabastrum(diploid) 216.221
CNS0095594Slightly white alabastrum(diploid) 321.299
CNS0095595Whole white alabastrum(diploid) 216.249
CNS0095596Whole white alabastrum(diploid) 313.435
CNS0095597Whole white alabastrum(diploid) 414.583
CNS0095598Silvery flower (diploied) 136.016
CNS0095599Silvery flower (diploied) 230.856
CNS0095600Silvery flower (diploied) 337.809
CNS0095601Golden flower (diploid) 132.533
CNS0095602Golden flower (diploid) 236.225
CNS0095603Golden flower (diploid) 335.545
CNS0095604Slightly white alabastrum(tetraploid) 117.855
CNS0095605Slightly white alabastrum(tetraploid) 214.193
CNS0095606Slightly white alabastrum(tetraploid) 337.690
CNS0095607Whole white alabastrum(tetraploid) 113.834
CNS0095608Whole white alabastrum(tetraploid) 210.086
CNS0095609Whole white alabastrum(tetraploid) 322.723
CNS0095610Silvery flower (tetraploid) 156.043
CNS0095611Silvery flower (tetraploid) 242.043
CNS0095612Silvery flower (tetraploid) 310.606
CNS0095613Golden flower (tetraploid) 125.454
CNS0095614Golden flower (tetraploid) 244.577
CNS0095615Golden flower (tetraploid) 321.154
CRA001975CRR073297Stem 123.752
CRR073298Stem 214.479
CRR073299Stem 312.642
CRR073300Leaf 114.347
CRR073301Leaf 212.082
CRR073302Leaf 37.984
CRR073303Juvenile bud 112.425
CRR073304Juvenile bud 28.376
CRR073305Juvenile bud 315.047
CRR073306Third green 16.258
CRR073307Third green 24.884
CRR073308Third green 38.246
CRR073309Second white 13.061
CRR073310Second white 27.687
CRR073311Second white 36.591
CRR073312Silver flowering 13.230
CRR073313Silver flowering 22.008
CRR073314Silver flowering 31.906
CRR073315Gold flowering 19.282
CRR073316Gold flowering 210.952
CRR073317Gold flowering 37.483
CRR073318Tawny withering 15.833
CRR073319Tawny withering 26.707
CRR073320Tawny withering 35.215