Gene detail

Detail information of GWHGAAZE004880

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AEM62885.1	0	ACC oxidase 6 [Actinidia chinensis]
Swissprot	tr\|P31237\|ACCO_ACTDE	0	1-aminocyclopropane-1-carboxylate oxidase
trEMBL	tr\|G3DSC4\|G3DSC4_ACTCH	0	ACC oxidase 6 {ECO:0000313\|EMBL:AEM62885.1}
TAIR10	AT1G05010.1	7E-116	ethylene-forming enzyme

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	123732238	123733525	+
GWHAAZE00000001	mRNA	123732238	123733525	+
GWHAAZE00000001	exon	123732238	123732318	+
GWHAAZE00000001	exon	123732462	123732688	+
GWHAAZE00000001	exon	123732784	123733117	+
GWHAAZE00000001	exon	123733289	123733525	+
GWHAAZE00000001	CDS	123732238	123732318	+
GWHAAZE00000001	CDS	123732462	123732688	+
GWHAAZE00000001	CDS	123732784	123733117	+
GWHAAZE00000001	CDS	123733289	123733525	+

Transcript Sequence
>GWHTAAZE004886 ATGGAGAAACTCAATGGTGAAGAGAGAGCTGCAACGATGGAGATCATCAAAGATGCTTGTGAGAACTGGGGCTTCTTTGAGTTGGTGAATCATGGGATATCTCATGAACTTATGGACACTGTGGAGAGGCTGACAAAAGATCACTACAACAAGTGCATGGAACAAAGGTTCAAGGAAATGGTTGCAACTAAGAGCTTAGACTCTCTTCAAACCGAAATTGTTGATTTGGACTGGGAAAGCACTTTCCACGTTCGCCATCTTCCCGTTTCAAACATATCCGAGATTCCTGATCTACAACAAGATTACAGGAAGGCAATGAAGGAGTTTGCAGAGGGAGTAGAAAAGCTAGCTGAGCAGCTCTTGGACTTGCTGTGTGAGAATCTTGGGCTAGAGAAAGGTTACCTCAAGAAGGCTTTCTATGGGTCCAAGGGTCCCACCTTTGGCACTAAGGTCAGCAACTATCCGCCGTGTCCCCGCCCTGAGCTTATCAAGGGCCTGCGGGCCCACACAGACGCCGGTGGCATCATCCTACTCTTCCAGGATGACAAGGTCAGTGGGCTCCAGCTCCTCAAAGACAGCCAATGGATCGATGTCCCACCAATGCACCACTCCATTGTTATCAACCTTGGAGACCAACTTGAGCCAGATGGGAACAGAATGTCGATAGCATCGTTCTATAATCCGGGCAGCGATGCTGTAATCCACCCGGCACCAATTCTCGTAGAGAAAGAAGAACAAAGTCAAGTTTACCCGAAATTCGTGTTCGAGGACTACATGAAGCTCTATGCTGGCCTCAAGTTCCAGGGCAAGGAGCCTAGGTTTGAAGCTATGAAGGCCGTTGAGAATACTGTCAACTCTGGTCCGATTGCCACGGTTTAA

Network for GWHGAAZE004880

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	5	58	1.50E-10
PF03171.21	2OG-FeII_Oxy	151	213	4.00E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05933	E1.14.17.4	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	94.922
	SRR3591706	second leaf	39.390
	SRR3591707	mature leaf	18.983
	SRR3591708	Shoot apex	86.399
	SRR3591709	Stem	48.286
	SRR3591710	White floral bud	183.518
	SRR3591711	White flower	213.516
	SRR3591712	Green floral bud	235.858
	SRR3591713	Yellow flower	70.366
SRP173429	SRR8316895	Juvenile bud stage	236.290
	SRR8316896	Juvenile bud stage	426.701
	SRR8316897	Juvenile bud stage	195.331
	SRR8316894	Third green stage	200.171
	SRR8316900	Third green stage	959.534
	SRR8316901	Third green stage	819.561
	SRR8316898	Complete white stage	210.001
	SRR8316899	Complete white stage	716.995
	SRR8316903	Complete white stage	309.409
	SRR8316902	Silver flowering stage	73.943
	SRR8316904	Silver flowering stage	136.133
	SRR8316905	Silver flowering stage	73.066
	SRR8316906	Gold flowering stage	35.749
	SRR8316907	Gold flowering stage	123.423
	SRR8316908	Gold flowering stage	104.206
SRP132670	SRR6706286	Control	515.839
	SRR6706287	Light intensity 50%	502.855
	SRR6706288	Light intensity 20%	470.692
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1738.071
	CNS0095593	Slightly white alabastrum(diploid) 2	677.748
	CNS0095594	Slightly white alabastrum(diploid) 3	1009.747
	CNS0095595	Whole white alabastrum(diploid) 2	722.827
	CNS0095596	Whole white alabastrum(diploid) 3	1092.780
	CNS0095597	Whole white alabastrum(diploid) 4	1082.068
	CNS0095598	Silvery flower (diploied) 1	148.030
	CNS0095599	Silvery flower (diploied) 2	155.032
	CNS0095600	Silvery flower (diploied) 3	305.086
	CNS0095601	Golden flower (diploid) 1	157.066
	CNS0095602	Golden flower (diploid) 2	178.088
	CNS0095603	Golden flower (diploid) 3	176.851
	CNS0095604	Slightly white alabastrum(tetraploid) 1	459.519
	CNS0095605	Slightly white alabastrum(tetraploid) 2	699.807
	CNS0095606	Slightly white alabastrum(tetraploid) 3	324.214
	CNS0095607	Whole white alabastrum(tetraploid) 1	654.135
	CNS0095608	Whole white alabastrum(tetraploid) 2	663.807
	CNS0095609	Whole white alabastrum(tetraploid) 3	794.731
	CNS0095610	Silvery flower (tetraploid) 1	187.681
	CNS0095611	Silvery flower (tetraploid) 2	144.725
	CNS0095612	Silvery flower (tetraploid) 3	87.278
	CNS0095613	Golden flower (tetraploid) 1	20.033
	CNS0095614	Golden flower (tetraploid) 2	54.370
	CNS0095615	Golden flower (tetraploid) 3	32.380
CRA001975	CRR073297	Stem 1	241.834
	CRR073298	Stem 2	272.132
	CRR073299	Stem 3	261.184
	CRR073300	Leaf 1	680.329
	CRR073301	Leaf 2	627.935
	CRR073302	Leaf 3	796.593
	CRR073303	Juvenile bud 1	841.058
	CRR073304	Juvenile bud 2	767.605
	CRR073305	Juvenile bud 3	854.852
	CRR073306	Third green 1	326.160
	CRR073307	Third green 2	560.492
	CRR073308	Third green 3	335.396
	CRR073309	Second white 1	86.450
	CRR073310	Second white 2	32.824
	CRR073311	Second white 3	12.626
	CRR073312	Silver flowering 1	2.375
	CRR073313	Silver flowering 2	3.322
	CRR073314	Silver flowering 3	6.392
	CRR073315	Gold flowering 1	2.646
	CRR073316	Gold flowering 2	5.187
	CRR073317	Gold flowering 3	4.443
	CRR073318	Tawny withering 1	7.092
	CRR073319	Tawny withering 2	7.463
	CRR073320	Tawny withering 3	14.555