Detail information of GWHGAAZE004870


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010686783.17.5893E-151PREDICTED: malonyl-CoA decarboxylase, mitochondrial isoform X2 [Beta vulgaris subsp. vulgaris]
trEMBLtr|A0A068U7B8|A0A068U7B8_COFCA4E-128Coffea canephora DH200=94 genomic scaffold, scaffold_12 {ECO:0000313|EMBL:CDP04440.1}
TAIR10AT4G04320.13E-88malonyl-CoA decarboxylase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene123544134123552275-
GWHAAZE00000001mRNA123544134123552275-
GWHAAZE00000001exon123544134123544166-
GWHAAZE00000001exon123544346123544430-
GWHAAZE00000001exon123544715123544800-
GWHAAZE00000001exon123545302123545374-
GWHAAZE00000001exon123545622123545750-
GWHAAZE00000001exon123546483123546740-
GWHAAZE00000001exon123546871123547010-
GWHAAZE00000001exon123547393123547476-
GWHAAZE00000001exon123548191123548249-
GWHAAZE00000001exon123549112123549159-
GWHAAZE00000001exon123549241123549389-
GWHAAZE00000001exon123550795123550978-
GWHAAZE00000001exon123551052123551122-
GWHAAZE00000001exon123551516123551595-
GWHAAZE00000001exon123552192123552275-
GWHAAZE00000001CDS123552192123552275-
GWHAAZE00000001CDS123551516123551595-
GWHAAZE00000001CDS123551052123551122-
GWHAAZE00000001CDS123550795123550978-
GWHAAZE00000001CDS123549241123549389-
GWHAAZE00000001CDS123549112123549159-
GWHAAZE00000001CDS123548191123548249-
GWHAAZE00000001CDS123547393123547476-
GWHAAZE00000001CDS123546871123547010-
GWHAAZE00000001CDS123546483123546740-
GWHAAZE00000001CDS123545622123545750-
GWHAAZE00000001CDS123545302123545374-
GWHAAZE00000001CDS123544715123544800-
GWHAAZE00000001CDS123544346123544430-
GWHAAZE00000001CDS123544134123544166-
Transcript Sequence

Network for GWHGAAZE004870

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17408.3MCD_N981614.50E-10
PF05292.12MCD2242767.30E-16
PF05292.12MCD4014813.10E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01578MLYCD Metabolic pathways map01100
Propanoate metabolismmap00640
beta-Alanine metabolismmap00410
AMPK signaling pathwaymap04152
Peroxisomemap04146

Gene Ontology

GO term OntologyName
GO:0006633biological_processfatty acid biosynthetic process
GO:0050080molecular_functionmalonyl-CoA decarboxylase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf25.732
SRR3591706second leaf15.014
SRR3591707mature leaf11.639
SRR3591708Shoot apex19.435
SRR3591709Stem40.370
SRR3591710White floral bud10.290
SRR3591711White flower12.970
SRR3591712Green floral bud12.419
SRR3591713Yellow flower12.400
SRP173429 SRR8316895Juvenile bud stage 12.311
SRR8316896Juvenile bud stage 19.732
SRR8316897Juvenile bud stage 8.216
SRR8316894Third green stage 7.653
SRR8316900Third green stage 16.675
SRR8316901Third green stage 15.948
SRR8316898Complete white stage 9.135
SRR8316899Complete white stage 21.655
SRR8316903Complete white stage 11.521
SRR8316902Silver flowering stage7.118
SRR8316904Silver flowering stage9.308
SRR8316905Silver flowering stage4.927
SRR8316906Gold flowering stage 16.178
SRR8316907Gold flowering stage 13.503
SRR8316908Gold flowering stage 10.638
SRP132670SRR6706286Control10.357
SRR6706287Light intensity 50%13.852
SRR6706288Light intensity 20%14.075
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.123
CNS0095593Slightly white alabastrum(diploid) 217.530
CNS0095594Slightly white alabastrum(diploid) 314.724
CNS0095595Whole white alabastrum(diploid) 210.535
CNS0095596Whole white alabastrum(diploid) 311.100
CNS0095597Whole white alabastrum(diploid) 410.023
CNS0095598Silvery flower (diploied) 112.073
CNS0095599Silvery flower (diploied) 212.143
CNS0095600Silvery flower (diploied) 311.727
CNS0095601Golden flower (diploid) 18.935
CNS0095602Golden flower (diploid) 212.176
CNS0095603Golden flower (diploid) 310.662
CNS0095604Slightly white alabastrum(tetraploid) 118.309
CNS0095605Slightly white alabastrum(tetraploid) 216.337
CNS0095606Slightly white alabastrum(tetraploid) 326.331
CNS0095607Whole white alabastrum(tetraploid) 19.287
CNS0095608Whole white alabastrum(tetraploid) 26.044
CNS0095609Whole white alabastrum(tetraploid) 316.894
CNS0095610Silvery flower (tetraploid) 113.782
CNS0095611Silvery flower (tetraploid) 213.182
CNS0095612Silvery flower (tetraploid) 37.660
CNS0095613Golden flower (tetraploid) 15.425
CNS0095614Golden flower (tetraploid) 29.270
CNS0095615Golden flower (tetraploid) 33.653
CRA001975CRR073297Stem 117.995
CRR073298Stem 216.406
CRR073299Stem 313.682
CRR073300Leaf 119.606
CRR073301Leaf 219.107
CRR073302Leaf 312.476
CRR073303Juvenile bud 110.150
CRR073304Juvenile bud 210.640
CRR073305Juvenile bud 315.414
CRR073306Third green 18.949
CRR073307Third green 27.856
CRR073308Third green 37.844
CRR073309Second white 12.369
CRR073310Second white 22.352
CRR073311Second white 31.631
CRR073312Silver flowering 10.741
CRR073313Silver flowering 20.430
CRR073314Silver flowering 30.521
CRR073315Gold flowering 17.341
CRR073316Gold flowering 212.037
CRR073317Gold flowering 34.268
CRR073318Tawny withering 113.369
CRR073319Tawny withering 212.378
CRR073320Tawny withering 314.482