Detail information of GWHGAAZE004858


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP04430.11.6809E-169unnamed protein product [Coffea canephora]
Swissprottr|O65388|PLY2_ARATH3E-160Putative pectate lyase 2 (Precursor)
trEMBLtr|A0A068U7B0|A0A068U7B0_COFCA6E-170Pectate lyase {ECO:0000256|RuleBase:RU361123}
TAIR10AT1G11920.13E-122Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene123360664123362404-
GWHAAZE00000001mRNA123360664123362404-
GWHAAZE00000001exon123360664123360891-
GWHAAZE00000001exon123361138123361276-
GWHAAZE00000001exon123361517123361620-
GWHAAZE00000001exon123361712123362404-
GWHAAZE00000001CDS123361712123362404-
GWHAAZE00000001CDS123361517123361620-
GWHAAZE00000001CDS123361138123361276-
GWHAAZE00000001CDS123360664123360891-
Transcript Sequence

Network for GWHGAAZE004858

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00544.20Pectate_lyase_41163023.80E-25
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01728pel Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Quorum sensingmap02024

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.726
SRR3591706second leaf0.108
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.802
SRR3591709Stem0.390
SRR3591710White floral bud27.039
SRR3591711White flower6.708
SRR3591712Green floral bud8.418
SRR3591713Yellow flower1.744
SRP173429 SRR8316895Juvenile bud stage 0.644
SRR8316896Juvenile bud stage 2.616
SRR8316897Juvenile bud stage 0.295
SRR8316894Third green stage 1.723
SRR8316900Third green stage 5.432
SRR8316901Third green stage 6.717
SRR8316898Complete white stage 6.790
SRR8316899Complete white stage 4.079
SRR8316903Complete white stage 9.399
SRR8316902Silver flowering stage5.047
SRR8316904Silver flowering stage23.175
SRR8316905Silver flowering stage4.396
SRR8316906Gold flowering stage 11.425
SRR8316907Gold flowering stage 6.164
SRR8316908Gold flowering stage 19.191
SRP132670SRR6706286Control11.094
SRR6706287Light intensity 50%8.191
SRR6706288Light intensity 20%7.462
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.496
CNS0095593Slightly white alabastrum(diploid) 29.653
CNS0095594Slightly white alabastrum(diploid) 39.515
CNS0095595Whole white alabastrum(diploid) 27.616
CNS0095596Whole white alabastrum(diploid) 324.952
CNS0095597Whole white alabastrum(diploid) 49.230
CNS0095598Silvery flower (diploied) 110.181
CNS0095599Silvery flower (diploied) 226.157
CNS0095600Silvery flower (diploied) 312.003
CNS0095601Golden flower (diploid) 17.037
CNS0095602Golden flower (diploid) 22.866
CNS0095603Golden flower (diploid) 33.822
CNS0095604Slightly white alabastrum(tetraploid) 13.912
CNS0095605Slightly white alabastrum(tetraploid) 22.638
CNS0095606Slightly white alabastrum(tetraploid) 31.279
CNS0095607Whole white alabastrum(tetraploid) 16.783
CNS0095608Whole white alabastrum(tetraploid) 22.244
CNS0095609Whole white alabastrum(tetraploid) 38.457
CNS0095610Silvery flower (tetraploid) 117.483
CNS0095611Silvery flower (tetraploid) 212.215
CNS0095612Silvery flower (tetraploid) 328.071
CNS0095613Golden flower (tetraploid) 11.544
CNS0095614Golden flower (tetraploid) 26.681
CNS0095615Golden flower (tetraploid) 316.233
CRA001975CRR073297Stem 10.338
CRR073298Stem 20.525
CRR073299Stem 30.265
CRR073300Leaf 13.108
CRR073301Leaf 22.023
CRR073302Leaf 32.929
CRR073303Juvenile bud 15.756
CRR073304Juvenile bud 212.794
CRR073305Juvenile bud 35.951
CRR073306Third green 120.521
CRR073307Third green 227.598
CRR073308Third green 354.004
CRR073309Second white 13.259
CRR073310Second white 29.208
CRR073311Second white 31.071
CRR073312Silver flowering 10.144
CRR073313Silver flowering 20.726
CRR073314Silver flowering 30.031
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.083
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000