Gene detail

Detail information of GWHGAAZE004834

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002269011.2	PREDICTED: starch synthase 3, chloroplastic/amyloplastic [Vitis vinifera]
Swissprot	tr\|Q43846\|SSY3_SOLTU	Soluble starch synthase 3, chloroplastic/amyloplastic (Precursor)
trEMBL	tr\|A0A068U877\|A0A068U877_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_12 {ECO:0000313\|EMBL:CDP04404.1}
TAIR10	AT1G11720.2	starch synthase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	123092596	123105125	+
GWHAAZE00000001	mRNA	123092596	123105125	+
GWHAAZE00000001	exon	123092596	123093931	+
GWHAAZE00000001	exon	123094675	123094889	+
GWHAAZE00000001	exon	123095141	123095411	+
GWHAAZE00000001	exon	123095703	123095878	+
GWHAAZE00000001	exon	123096466	123096573	+
GWHAAZE00000001	exon	123097696	123097805	+
GWHAAZE00000001	exon	123097993	123098098	+
GWHAAZE00000001	exon	123098752	123098922	+
GWHAAZE00000001	exon	123099123	123099251	+
GWHAAZE00000001	exon	123099862	123100044	+
GWHAAZE00000001	exon	123100249	123100380	+
GWHAAZE00000001	exon	123100487	123100598	+
GWHAAZE00000001	exon	123104115	123104238	+
GWHAAZE00000001	exon	123104661	123105125	+
GWHAAZE00000001	CDS	123092596	123093931	+
GWHAAZE00000001	CDS	123094675	123094889	+
GWHAAZE00000001	CDS	123095141	123095411	+
GWHAAZE00000001	CDS	123095703	123095878	+
GWHAAZE00000001	CDS	123096466	123096573	+
GWHAAZE00000001	CDS	123097696	123097805	+
GWHAAZE00000001	CDS	123097993	123098098	+
GWHAAZE00000001	CDS	123098752	123098922	+
GWHAAZE00000001	CDS	123099123	123099251	+
GWHAAZE00000001	CDS	123099862	123100044	+
GWHAAZE00000001	CDS	123100249	123100380	+
GWHAAZE00000001	CDS	123100487	123100598	+
GWHAAZE00000001	CDS	123104115	123104238	+
GWHAAZE00000001	CDS	123104661	123104796	+
GWHAAZE00000001	three_prime_UTR	123104797	123105125	+

Transcript Sequence
>GWHTAAZE004840 ATGCCTAGAACACAGGTAAGATCTAGCAGCCAGAGGAGGGATCATAAGAATAATGGAGAGAAAGAAGGTTCAAATACTACTACATCCAAACAGTACATAGGGACCAAGAAAAAAACAGTTGAAATGAAAGTTGATACTGATGAAGAACAAACTGCTCAAGTTCCTCAAGGACAGAAAGAAAGTGGAAATGATATTGATGCTATTTTTGAGAAAGAATCATCCTCAAGGAAACCATTGTCTATAGTTAAAGTAACTCAATTCACGGAAAATGGTAGAATTGGCTTAGCTGGCGAGAACATGGGAAAAAAACCAACAGTAAAGAATGATCTTAAAGATAGAGCGACAATGGCAAAGAGCGATGAGAAAGGTTTAGAACAAAAACAACGGGATATCACCATGAAAGGTGATGCCCAACAAAATGAAATTGTTGAGCTTGCTGGGAATAAAACCAAAAACCAATTTGTGAAGCAAAAGTCAGCTAAGGAGGACGAAATGTTAGTCACCAATAAAAAAGATGAGGATGATTCTGCTCTAAAGTTCAAGCTGGAGATGGAAGCAAAATTACGTAAACAGGCACTTGAGAGGCTTGCAGAGGAGAACTTTTCGAAAGGGAATAAAATGTTTTATTATCCTGAGGTGGCAACACCTGGTCAAGATATAAAAGTGTTCCTTAATAAGAGCCTTTCTGCTTTGAAGAACGAACCCAATGTCATGATCATGGGTGCCTTTAATGACTGGCGGTGGAAATCTTTTAGCATGGAGTTGAGTAAGACTGATCTCAATGGAGATTGGTGGTCTTGCCAGGTTCATGTTCCTAAGGAAGCGTACAAGGCTGATTTTGTTTTCTTTTATGGGAAGGCTGTCTATGAAAATAACGATACAAAAGATTTCTGCATACCTGTTGAAGGTGGAATTAGCGTATTTGAATTTGAAGATTTCTTGCTTGAGGAGAAACGTAGGGAACTTGAGAAACTTGCCAAGGAACAAGCTGAAAGGGAAAGACTAGCAGAGGCACAAAGGAGAATAGAAGCAGAGAAGGCAGCTAGAGAAGTTGATAGAGCACAGGCGAAAGGGGAAGCTGAAAGGAGAAGGGGAATGTTGCAAGAACTGATGAAAAAGGCCATGAAATCTGTTGATAATGTATGGTATATAGAGCCTAGTCTGTTCAAAGGCAAGGACAAGGTCAAGTTATATTATAACAAGAGTTCAGGTCCACTTGCTAAAGCGAAGGATATATGGATACATGGAGGATATAATAATTGGAAGGATGGTTTGTCCATTGTTTTGATGCTTGTCAGATCTGAGAAAAAGGAAGGCGACTGGTGGTATGCTGATGTTGTCGTGCCTGATCGAGCCCTTGTTTTGGATTGGGTTTTTGCTGATGACCCACCTCAGCAAGCCATTGTTTATGACAACAATCAACGCCAAGATTTCCATGCTATTGTCCCTCAAAGCATTTTTGAAGAGCTCTACTGGGTTGAAGAAGAACATGAGATATACAGGAAACTTCAGGAGGAGAGAAGGTTAAGAGAGGAGGCAATACGAGCCAAGGTTGAAAGAACAGCACGAATGAAAGCTGAAACGAAGGAAAGGACTATGAAACTGTTTCTGTTGTCTCAAAAGCATATAGTCTATACTGAACCTCTTGACGTTCAAGCAGGGAGCTCTGTGACAGTTTTCTATAATCCTACCAACACAGTTCTGAACGGGAAATCTGAAATTTGGTTCAGATGCTCATTTAACCGTTGGACCCATCGCCTGGGTCCATTGCCACCTCAGAAAATGTTGCCTGCAGAGAAAGGCTCCCATGTCAAAGCCATAGTCAAGATTCCCCTGGATGCTTATACAATGGACTTTGTATTCTCTGAGAAGGAAGATGGTGGAATTTTTGACAACAAGAATGGTATGGACTACCACATACCTGTGTTTGGAGGAGTCACAAAGGAACCACCAATGCACATTGTGCATATTGCTGTTGAAATGGCTCCCATTGCGAAGGTTGGAGGCCTCGGTGATGTTGTTACTAGTCTCTCCCGCGCTGTACAGGATCTAAACCACAAAGTTGACATAATCCTTCCAAAGTATGACTGTTTGAAATTTGGAAATGTGAAGGACTTTCAGTTTCGTAAGAGCTATTTTTGGGGTGGCACCGAAATAAAAGTTTGGTTTGGGAAGGTAGAAGGCCTTTCTGTTTACTTTTTGGAGCCTCAGAACAGATTCTTTGGGGCAGGGTGCATATATGGTTGTCGGAATGATGGGGAAAGATTTGGGTTCTTTTGTCATGCTGCTCTGGAATTTCTTCTTCAAAGTGGATCTCATCCTGATATTATTCATTGCCATGATTGGTCAAGTGCTCCGGTTGCATGGTTGTTTAAGGACCATTATATGCACTATGGTCTCACCAAAGCATGCGTTGTCTTTACTATTCATAACCTTGAATTTGGGGCTCCCTTAATTGGGAAAGCAATGGCATACTCTGACAAGGCTACAACTGTATCCCCTACTTACTTACAGGAAGTATCTGGGAACACTGCAGTTGCTCCTTATCTTCACAAGGTCCATGGTATATTAAATGGAATTGACCCGGATATGTGGGACCCATATAATGATGGCTTTCTCCCTATATCTTACACCTCAGAAAATGTAGTTGAAGGAAAAAGGGCAGCCAAGGAAACCTTGCAGCGCAGGCTTGGCCTTAAAAGAGCTGATCTGCCTTTGGTAGGAATTATCAGTCGTTTGACTCTTCAGAAAGGAATCCACCTCATCAAACATGCTATTTGGCGCACCCTTGATCGCGGAGGACAGGTTGTATTACTAGGTTCAGCCCCAGATCCTCGCATTCAAAATGATTTCGTTAATTTGGCAAATCAGTTACATTCTTCACATCATGATCGTGCACGTCTCTGTTTGACCTATGATGAACCTCTGTCTCACTTGATATATGCTGGTGCAGATTTCATTTTAGTCCCTTCAATATTTGAGCCATGTGGACTAACTCAACTCACAGCTATGAGATATGGTTCGATTCCTATTGTTCGTAAAACCGGAGGACTTTATGATACTGTTTTCGATGTTGACCATGATAAAGAAAGGGCACAAACACAAGGTCTTGAGCCAAATGGTTTCAATTTTGAGGGAGCTGATCCCTCTGGTGTTGATTACGCTGTCAATAGAGCAATATCTGCTTGGTACGATGGTCGGGATTGGTTTAATGCACTATGCAAGAGGGTGATGGAGCAAGACTGGTCGTGGAATCGACCTGCTCTTGATTACTTGGAGCTCTACCATGCTGCTCGAAAGTTGAAGTAACAATTAGATCCAAGGAGCAAGTTAGATCCCTGTCCCACAATTTGTACAGGTTTAGTCATAGCCCCAGGTTTAGTTTTGTTTTTACGTAAATGTCAGTATAGTTGCTGCATTTAATTGAGTTATAATCAGAATAATAAGGCAATGTCAGTTTTAAAGCTTGATGTCATTCATTTTCTGTTTAGCATAAAAGCAACAGCTAAAGCATCAAATAATGCAGCGTTACTATTAAACTCAATAATAGTGCCGATAATGAGATTCTGTTAGGTGCCTCTAGACATGAATGAACTGCAGAAGATTATGAGAGAATTATGTTCATAATAAGTCAAGAA

Network for GWHGAAZE004834

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16760.6	CBM53	221	301	9.00E-15
PF16760.6	CBM53	395	481	5.80E-19
PF16760.6	CBM53	557	642	2.40E-14
PF08323.12	Glyco_transf_5	653	841	2.50E-45

Protein Sequence

>GWHPAAZE004837
MPRTQVRSSSQRRDHKNNGEKEGSNTTTSKQYIGTKKKTVEMKVDTDEEQTAQVPQGQKESGNDIDAIFEKESSSRKPLSIVKVTQFTENGRIGLAGENMGKKPTVKNDLKDRATMAKSDEKGLEQKQRDITMKGDAQQNEIVELAGNKTKNQFVKQKSAKEDEMLVTNKKDEDDSALKFKLEMEAKLRKQALERLAEENFSKGNKMFYYPEVATPGQDIKVFLNKSLSALKNEPNVMIMGAFNDWRWKSFSMELSKTDLNGDWWSCQVHVPKEAYKADFVFFYGKAVYENNDTKDFCIPVEGGISVFEFEDFLLEEKRRELEKLAKEQAERERLAEAQRRIEAEKAAREVDRAQAKGEAERRRGMLQELMKKAMKSVDNVWYIEPSLFKGKDKVKLYYNKSSGPLAKAKDIWIHGGYNNWKDGLSIVLMLVRSEKKEGDWWYADVVVPDRALVLDWVFADDPPQQAIVYDNNQRQDFHAIVPQSIFEELYWVEEEHEIYRKLQEERRLREEAIRAKVERTARMKAETKERTMKLFLLSQKHIVYTEPLDVQAGSSVTVFYNPTNTVLNGKSEIWFRCSFNRWTHRLGPLPPQKMLPAEKGSHVKAIVKIPLDAYTMDFVFSEKEDGGIFDNKNGMDYHIPVFGGVTKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHKVDIILPKYDCLKFGNVKDFQFRKSYFWGGTEIKVWFGKVEGLSVYFLEPQNRFFGAGCIYGCRNDGERFGFFCHAALEFLLQSGSHPDIIHCHDWSSAPVAWLFKDHYMHYGLTKACVVFTIHNLEFGAPLIGKAMAYSDKATTVSPTYLQEVSGNTAVAPYLHKVHGILNGIDPDMWDPYNDGFLPISYTSENVVEGKRAAKETLQRRLGLKRADLPLVGIISRLTLQKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPIVRKTGGLYDTVFDVDHDKERAQTQGLEPNGFNFEGADPSGVDYAVNRAISAWYDGRDWFNALCKRVMEQDWSWNRPALDYLELYHAARKLK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00703	glgA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Biofilm formation - Escherichia coli	map02026

Gene Ontology

GO term	Ontology	Name
GO:2001070	molecular_function	starch binding
GO:0004373	molecular_function	glycogen (starch) synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.324
	SRR3591706	second leaf	28.516
	SRR3591707	mature leaf	49.300
	SRR3591708	Shoot apex	20.404
	SRR3591709	Stem	23.507
	SRR3591710	White floral bud	13.374
	SRR3591711	White flower	20.096
	SRR3591712	Green floral bud	24.278
	SRR3591713	Yellow flower	23.497
SRP173429	SRR8316895	Juvenile bud stage	13.038
	SRR8316896	Juvenile bud stage	20.781
	SRR8316897	Juvenile bud stage	9.860
	SRR8316894	Third green stage	9.759
	SRR8316900	Third green stage	25.018
	SRR8316901	Third green stage	22.064
	SRR8316898	Complete white stage	3.682
	SRR8316899	Complete white stage	20.424
	SRR8316903	Complete white stage	11.739
	SRR8316902	Silver flowering stage	5.623
	SRR8316904	Silver flowering stage	8.835
	SRR8316905	Silver flowering stage	4.300
	SRR8316906	Gold flowering stage	13.384
	SRR8316907	Gold flowering stage	14.135
	SRR8316908	Gold flowering stage	10.027
SRP132670	SRR6706286	Control	14.846
	SRR6706287	Light intensity 50%	14.774
	SRR6706288	Light intensity 20%	16.959
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.537
	CNS0095593	Slightly white alabastrum(diploid) 2	12.883
	CNS0095594	Slightly white alabastrum(diploid) 3	15.011
	CNS0095595	Whole white alabastrum(diploid) 2	17.477
	CNS0095596	Whole white alabastrum(diploid) 3	18.177
	CNS0095597	Whole white alabastrum(diploid) 4	18.399
	CNS0095598	Silvery flower (diploied) 1	15.929
	CNS0095599	Silvery flower (diploied) 2	13.311
	CNS0095600	Silvery flower (diploied) 3	19.307
	CNS0095601	Golden flower (diploid) 1	14.445
	CNS0095602	Golden flower (diploid) 2	23.604
	CNS0095603	Golden flower (diploid) 3	22.751
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.155
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.446
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.959
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.651
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.440
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.396
	CNS0095610	Silvery flower (tetraploid) 1	17.168
	CNS0095611	Silvery flower (tetraploid) 2	20.267
	CNS0095612	Silvery flower (tetraploid) 3	9.719
	CNS0095613	Golden flower (tetraploid) 1	8.302
	CNS0095614	Golden flower (tetraploid) 2	16.017
	CNS0095615	Golden flower (tetraploid) 3	11.925
CRA001975	CRR073297	Stem 1	22.007
	CRR073298	Stem 2	20.803
	CRR073299	Stem 3	14.602
	CRR073300	Leaf 1	26.214
	CRR073301	Leaf 2	20.695
	CRR073302	Leaf 3	15.876
	CRR073303	Juvenile bud 1	18.890
	CRR073304	Juvenile bud 2	12.701
	CRR073305	Juvenile bud 3	19.269
	CRR073306	Third green 1	3.363
	CRR073307	Third green 2	2.688
	CRR073308	Third green 3	3.662
	CRR073309	Second white 1	4.087
	CRR073310	Second white 2	5.592
	CRR073311	Second white 3	6.575
	CRR073312	Silver flowering 1	5.524
	CRR073313	Silver flowering 2	6.773
	CRR073314	Silver flowering 3	5.645
	CRR073315	Gold flowering 1	13.910
	CRR073316	Gold flowering 2	26.374
	CRR073317	Gold flowering 3	6.622
	CRR073318	Tawny withering 1	9.579
	CRR073319	Tawny withering 2	9.947
	CRR073320	Tawny withering 3	11.137