Gene detail

Detail information of GWHGAAZE004805

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006467991.1	1.724E-118	PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B-like [Citrus sinensis]
Swissprot	tr\|Q9SYB5\|OST3B_ARATH	2E-103	Probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B (Precursor)
trEMBL	tr\|A0A067G7D5\|A0A067G7D5_CITSI	6E-119	Uncharacterized protein {ECO:0000313\|EMBL:KDO75538.1}
TAIR10	AT1G61790.1	2E-84	Oligosaccharyltransferase complex/magnesium transporter family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	122601579	122602865	+
GWHAAZE00000001	mRNA	122601579	122602865	+
GWHAAZE00000001	exon	122601579	122602208	+
GWHAAZE00000001	exon	122602498	122602865	+
GWHAAZE00000001	CDS	122601579	122602208	+
GWHAAZE00000001	CDS	122602498	122602743	+
GWHAAZE00000001	three_prime_UTR	122602744	122602865	+

Transcript Sequence
>GWHTAAZE004811 ATGGCAGTCTCTGTAAAACCAATCCTCCTTTTCCTTCTCCTCCTATCTCTCCTACCTCAAAAATCCCTCTCTTTCAATCCGAATCCAGACCCACTCTCGGATCTCCAAACCCTCCAATCCCAATCAAGATCCGGCATAATCCACCTCAATGGCCACCTCTTCCACCACCTCATCGCCACCACCAAACCACCCCGCCCCTTCTCCCTCCTCATCTTCTTCGACGCTCACCAACTCCACTCCAAACCCGAGCTCCACCTCAAAGACCTCAAACACGAATTCTCCCTCCTTGCCACCTCATTCATCACCAACAACAACAATACCCCATCTCAATTCAAGCTATTTTTTTGCGATATCGAGTACAGAGAATCTCAGTCCACCTTCACCCAATTCGGCGTTAATGGTGTCCCTCACATTCGCCTCGTTGGTCCTAACGCAAAAGACCTTAAATCCGATACCATACAAATGGATGCAGGTGATTTTTCTGGCCTCGCCGAATCCATGGCCCAGTTTGTTGAAATCAAAACACAGCTCACCGTTGGACCCATTCACCGACCCCCGAATTTTTCCTCTAAACAATTCCAATTCATTGTCGCGGTAATTCTGATCTTGTCGCCCGTAGTGGCCAAAAAGGTGTTCGCCGGAGAAACAATTTTGCATGGCTGGAGGGTTTGGCTCGCCGGAGCAGTGTTTGTGTACTTTTTCAGTGTTTCAGGATCTATGCATATTATAATAAGGAAGATGCCAATGGTTTTATCAGATAGGAAGGATCCCTCGAAGCTGATTTTCTTTTACCAGGGGACAGGGATGCAGCTCGGGGCTGAAGGGTTTACAATCGGATTTTGTATACAATTGTGGGAGTTTTGTTGGCTTTTATGACCCATGCATTGATTATGATTAGGGATGTGCAGAAACAGAGGTTAATGATGATTATTACGCTCATTATTTGTTTTTGGGCGGTGAAGAAGGTGGTGTTCTTAGATAATTGGAAGACGGGTTAT

Network for GWHGAAZE004805

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04756.14	OST3_OST6	34	286	1.90E-58

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12669	OST3, OST6	Metabolic pathways	map01100
		N-Glycan biosynthesis	map00510
		Various types of N-glycan biosynthesis	map00513
		Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.189
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.206
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.860
	SRR3591710	White floral bud	0.778
	SRR3591711	White flower	0.460
	SRR3591712	Green floral bud	15.055
	SRR3591713	Yellow flower	0.668
SRP173429	SRR8316895	Juvenile bud stage	8.109
	SRR8316896	Juvenile bud stage	19.210
	SRR8316897	Juvenile bud stage	7.582
	SRR8316894	Third green stage	5.825
	SRR8316900	Third green stage	13.957
	SRR8316901	Third green stage	18.684
	SRR8316898	Complete white stage	0.934
	SRR8316899	Complete white stage	2.070
	SRR8316903	Complete white stage	1.846
	SRR8316902	Silver flowering stage	1.163
	SRR8316904	Silver flowering stage	2.365
	SRR8316905	Silver flowering stage	1.038
	SRR8316906	Gold flowering stage	3.123
	SRR8316907	Gold flowering stage	2.313
	SRR8316908	Gold flowering stage	4.848
SRP132670	SRR6706286	Control	10.097
	SRR6706287	Light intensity 50%	8.874
	SRR6706288	Light intensity 20%	7.680
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.669
	CNS0095593	Slightly white alabastrum(diploid) 2	12.391
	CNS0095594	Slightly white alabastrum(diploid) 3	23.925
	CNS0095595	Whole white alabastrum(diploid) 2	16.163
	CNS0095596	Whole white alabastrum(diploid) 3	23.362
	CNS0095597	Whole white alabastrum(diploid) 4	15.679
	CNS0095598	Silvery flower (diploied) 1	2.435
	CNS0095599	Silvery flower (diploied) 2	1.196
	CNS0095600	Silvery flower (diploied) 3	3.689
	CNS0095601	Golden flower (diploid) 1	0.724
	CNS0095602	Golden flower (diploid) 2	4.039
	CNS0095603	Golden flower (diploid) 3	3.689
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.699
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.237
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.610
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.907
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.197
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.130
	CNS0095610	Silvery flower (tetraploid) 1	4.899
	CNS0095611	Silvery flower (tetraploid) 2	4.388
	CNS0095612	Silvery flower (tetraploid) 3	3.748
	CNS0095613	Golden flower (tetraploid) 1	12.197
	CNS0095614	Golden flower (tetraploid) 2	6.850
	CNS0095615	Golden flower (tetraploid) 3	2.069
CRA001975	CRR073297	Stem 1	8.120
	CRR073298	Stem 2	9.362
	CRR073299	Stem 3	8.571
	CRR073300	Leaf 1	12.027
	CRR073301	Leaf 2	13.567
	CRR073302	Leaf 3	8.997
	CRR073303	Juvenile bud 1	5.139
	CRR073304	Juvenile bud 2	3.689
	CRR073305	Juvenile bud 3	4.406
	CRR073306	Third green 1	2.938
	CRR073307	Third green 2	3.431
	CRR073308	Third green 3	5.616
	CRR073309	Second white 1	2.578
	CRR073310	Second white 2	1.122
	CRR073311	Second white 3	3.632
	CRR073312	Silver flowering 1	2.765
	CRR073313	Silver flowering 2	3.239
	CRR073314	Silver flowering 3	1.509
	CRR073315	Gold flowering 1	1.030
	CRR073316	Gold flowering 2	0.414
	CRR073317	Gold flowering 3	0.308
	CRR073318	Tawny withering 1	0.998
	CRR073319	Tawny withering 2	1.170
	CRR073320	Tawny withering 3	0.082