Gene detail

Detail information of GWHGAAZE004773

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO99694.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|B9RXW0\|TPS7_RICCO	0	Alpha-farnesene synthase
trEMBL	tr\|A0A068TUT3\|A0A068TUT3_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313\|EMBL:CDO99694.1}
TAIR10	AT3G25810.1	2E-98	Terpenoid cyclases/Protein prenyltransferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	122114525	122117441	+
GWHAAZE00000001	mRNA	122114525	122117441	+
GWHAAZE00000001	exon	122114525	122114653	+
GWHAAZE00000001	exon	122114907	122115174	+
GWHAAZE00000001	exon	122115435	122115765	+
GWHAAZE00000001	exon	122116042	122116260	+
GWHAAZE00000001	exon	122116358	122116499	+
GWHAAZE00000001	exon	122116648	122116902	+
GWHAAZE00000001	exon	122117145	122117441	+
GWHAAZE00000001	CDS	122114525	122114653	+
GWHAAZE00000001	CDS	122114907	122115174	+
GWHAAZE00000001	CDS	122115435	122115765	+
GWHAAZE00000001	CDS	122116042	122116260	+
GWHAAZE00000001	CDS	122116358	122116499	+
GWHAAZE00000001	CDS	122116648	122116902	+
GWHAAZE00000001	CDS	122117145	122117441	+

Transcript Sequence
>GWHTAAZE004779 ATGGATTGTGCAAAAGGCAACACTGAACCCTTTGGTACAATCGATGGAAGCCTTGAGCGGAGATCTGCCAATTACAAGCCAAACATTTGGAATTATGATCTCATACAGTCTCTCACTAATGAGTACACTGAGGACAGACACACAGGAGAAGCTCAAGAGCTACGAAAGGAGATTATCAACATATTCGTAAAAACAGTGGACCCTGTGGCCAAATTAGAGCTCATTGACAGAATAGAAAAAGTGGGTCTGGCCTACATTTTTGAAGAGGAAATTAAAGAGGCCATGGACGCATCATTATGTTCTAATTACAAAAACCACCCCAGCATAACAAGGGATCTTTATGCAACTTCACTATGCTTTAGGCTCCTTAGGCAGCATGGTTATATTGTTTCCCAAGACATGTTTGAAAGATTCGTGGACGGAACGGGTAAATTCACGAAAGGCGCACTCTCCAACACAAAAGCCATGCTCGAGCTTTATGAAGCTTCCCATCTAGCCTTAGAAGATGAACACATCTTAAATGAGGCCAGCTTGAGCACAGCAATTCTCAAAACCTCCTATGCTTTGAAACTTCCTTTGCAATGGGGTGTGGAGTGGTATAATGTCAAAAGACAGATCGAAATACTCGGCAAAGAGGATAACACAAACAACGTTTTACTCAAATTAGCAAAACTTAACTTCAACAGGGTTCAAGCCGCACACCACAAAGATCTCAGAGAGATATTAAGGTGGTGGAGGAACCTTGGACTCGCAGAATCTTTGAGCTTTACTAGGAACCGAATTGTTGAAAGTTACTTATGGGCTGTGGGAGTTGCTTTTGAGCCTCGTGAAGGAAGTCTTAGAAAATGGCTTGCCAAAGTCACTAAGATGATAATAATAATTGATGATGTCTACGATGTTTATGGTTCGTTGGAAGAATTAGAGCACTTCACTGCAGCTGTTAATAGGTGGGATACTAAGGAAATTGAAAAGCTACCTGATTGTATGAAGATTTGTTTCCAAACCCTGCATGAAGTAACCAATGAGATTGCATTCGAAATTCAGAAAGAAAAGGGTTGGAATTTGGTGCTACCTTATTTACAACAAGCGTGGGCAGATTTTTGCAAAGCATTGCTTGTGGAAGCGCAGTGGTACAACAAGGGTTATACACCTTCACTTCAAGAGTATCTAGATAATGGCTGGATATCCTCATCTGGCCCGGTTCTTTCTCTTCACGTACTCTTTTCAGTAACACATGAGGTGCAACTACAAGAGCAAGTCACTTATTTGCTCCAAAAAACTCAAGACCTTGTACACTATACCTCTCTTATAATTCGACTTTGCAACGACGAAGGGACTTCAGCTGCCGAACTAGAAAGAGGCGATGCCCCTTCATCAATTCTGTGTTTTATGAGGGAAGCAAACGCAACAGAAGAGGCAGCTCGAAAGCACATTAGAAGTGTAATAAGCAATACATGGAAGAAAATCAACAAAGAGTGCATAATTCAATCTCCATTGTTGAAGCCATTTGTGAGGTATACAACAAACACAGCTCGGGTGGCTCATTTCATTTACCAAAATGGAGACGGGTTCGGTGTTCAAGACCGTGAGACTCGAGATCAAATATCGTCTCTATTGGTGGAACCTCTTGTACTTGACTAA

Network for GWHGAAZE004773

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01397.22	Terpene_synth	29	184	1.20E-40
PF03936.17	Terpene_synth_C	220	488	1.00E-94

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14173	AFS1	Biosynthesis of secondary metabolites	map01110
K14173	AFS1	Sesquiterpenoid and triterpenoid biosynthesis	map00909

Gene Ontology

GO term	Ontology	Name
GO:0010333	molecular_function	terpene synthase activity
GO:0016829	molecular_function	lyase activity
GO:0000287	molecular_function	magnesium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.309
	SRR3591706	second leaf	30.720
	SRR3591707	mature leaf	199.888
	SRR3591708	Shoot apex	7.623
	SRR3591709	Stem	2.668
	SRR3591710	White floral bud	2.660
	SRR3591711	White flower	11.087
	SRR3591712	Green floral bud	0.509
	SRR3591713	Yellow flower	25.840
SRP173429	SRR8316895	Juvenile bud stage	1.047
	SRR8316896	Juvenile bud stage	1.751
	SRR8316897	Juvenile bud stage	0.195
	SRR8316894	Third green stage	0.118
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.128
	SRR8316898	Complete white stage	1.150
	SRR8316899	Complete white stage	0.164
	SRR8316903	Complete white stage	0.900
	SRR8316902	Silver flowering stage	0.353
	SRR8316904	Silver flowering stage	1.112
	SRR8316905	Silver flowering stage	0.385
	SRR8316906	Gold flowering stage	1.744
	SRR8316907	Gold flowering stage	4.760
	SRR8316908	Gold flowering stage	4.295
SRP132670	SRR6706286	Control	0.397
	SRR6706287	Light intensity 50%	0.290
	SRR6706288	Light intensity 20%	0.030
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.545
	CNS0095593	Slightly white alabastrum(diploid) 2	0.664
	CNS0095594	Slightly white alabastrum(diploid) 3	2.351
	CNS0095595	Whole white alabastrum(diploid) 2	0.036
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.095
	CNS0095598	Silvery flower (diploied) 1	2.168
	CNS0095599	Silvery flower (diploied) 2	1.644
	CNS0095600	Silvery flower (diploied) 3	1.010
	CNS0095601	Golden flower (diploid) 1	9.861
	CNS0095602	Golden flower (diploid) 2	10.016
	CNS0095603	Golden flower (diploid) 3	11.429
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.042
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.022
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.383
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.070
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.027
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	13.879
	CNS0095611	Silvery flower (tetraploid) 2	3.264
	CNS0095612	Silvery flower (tetraploid) 3	0.988
	CNS0095613	Golden flower (tetraploid) 1	23.827
	CNS0095614	Golden flower (tetraploid) 2	20.172
	CNS0095615	Golden flower (tetraploid) 3	0.227
CRA001975	CRR073297	Stem 1	0.263
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.115
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.005
	CRR073310	Second white 2	0.011
	CRR073311	Second white 3	0.007
	CRR073312	Silver flowering 1	0.267
	CRR073313	Silver flowering 2	0.164
	CRR073314	Silver flowering 3	0.480
	CRR073315	Gold flowering 1	0.912
	CRR073316	Gold flowering 2	1.065
	CRR073317	Gold flowering 3	4.217
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.478
	CRR073320	Tawny withering 3	0.000