Detail information of GWHGAAZE004740


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010277904.13.65354E-55PREDICTED: lysine-specific demethylase JMJ25-like [Nelumbo nucifera]
Swissprottr|O81001|GRF1_ARATH0.00000005Growth-regulating factor 1
trEMBLtr|F6I740|F6I740_VITVI8E-57Putative uncharacterized protein {ECO:0000313|EMBL:CCB62758.1}
TAIR10AT4G21430.11E-35Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene121455311121456166-
GWHAAZE00000001mRNA121455311121456166-
GWHAAZE00000001exon121455311121455367-
GWHAAZE00000001exon121455477121456166-
GWHAAZE00000001CDS121455477121456166-
GWHAAZE00000001CDS121455311121455367-
Transcript Sequence

Network for GWHGAAZE004740

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08879.11WRC8493.30E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15601KDM3 Thermogenesis map04714

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.747
SRR3591706second leaf4.541
SRR3591707mature leaf4.195
SRR3591708Shoot apex6.362
SRR3591709Stem4.946
SRR3591710White floral bud4.664
SRR3591711White flower3.973
SRR3591712Green floral bud4.179
SRR3591713Yellow flower2.345
SRP173429 SRR8316895Juvenile bud stage 2.940
SRR8316896Juvenile bud stage 3.299
SRR8316897Juvenile bud stage 1.577
SRR8316894Third green stage 1.525
SRR8316900Third green stage 2.087
SRR8316901Third green stage 3.664
SRR8316898Complete white stage 0.376
SRR8316899Complete white stage 3.209
SRR8316903Complete white stage 1.734
SRR8316902Silver flowering stage0.991
SRR8316904Silver flowering stage1.065
SRR8316905Silver flowering stage0.607
SRR8316906Gold flowering stage 2.178
SRR8316907Gold flowering stage 1.135
SRR8316908Gold flowering stage 2.221
SRP132670SRR6706286Control2.575
SRR6706287Light intensity 50%2.432
SRR6706288Light intensity 20%3.357
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.152
CNS0095593Slightly white alabastrum(diploid) 20.513
CNS0095594Slightly white alabastrum(diploid) 30.873
CNS0095595Whole white alabastrum(diploid) 20.862
CNS0095596Whole white alabastrum(diploid) 30.611
CNS0095597Whole white alabastrum(diploid) 41.379
CNS0095598Silvery flower (diploied) 11.818
CNS0095599Silvery flower (diploied) 23.075
CNS0095600Silvery flower (diploied) 33.390
CNS0095601Golden flower (diploid) 12.252
CNS0095602Golden flower (diploid) 24.680
CNS0095603Golden flower (diploid) 32.644
CNS0095604Slightly white alabastrum(tetraploid) 11.740
CNS0095605Slightly white alabastrum(tetraploid) 21.847
CNS0095606Slightly white alabastrum(tetraploid) 35.599
CNS0095607Whole white alabastrum(tetraploid) 10.735
CNS0095608Whole white alabastrum(tetraploid) 20.300
CNS0095609Whole white alabastrum(tetraploid) 33.179
CNS0095610Silvery flower (tetraploid) 13.637
CNS0095611Silvery flower (tetraploid) 24.320
CNS0095612Silvery flower (tetraploid) 31.892
CNS0095613Golden flower (tetraploid) 11.071
CNS0095614Golden flower (tetraploid) 21.428
CNS0095615Golden flower (tetraploid) 30.994
CRA001975CRR073297Stem 16.106
CRR073298Stem 24.254
CRR073299Stem 32.565
CRR073300Leaf 13.302
CRR073301Leaf 23.969
CRR073302Leaf 32.920
CRR073303Juvenile bud 11.731
CRR073304Juvenile bud 20.380
CRR073305Juvenile bud 30.868
CRR073306Third green 10.331
CRR073307Third green 20.000
CRR073308Third green 30.468
CRR073309Second white 10.392
CRR073310Second white 20.344
CRR073311Second white 30.461
CRR073312Silver flowering 10.299
CRR073313Silver flowering 20.814
CRR073314Silver flowering 30.873
CRR073315Gold flowering 13.130
CRR073316Gold flowering 22.485
CRR073317Gold flowering 31.074
CRR073318Tawny withering 11.569
CRR073319Tawny withering 21.783
CRR073320Tawny withering 31.251