Gene detail

Detail information of GWHGAAZE004641

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002509423.1	protein with unknown function [Ricinus communis]
Swissprot	tr\|Q9SGP2\|HSL1_ARATH	Receptor-like protein kinase HSL1 (Precursor)
trEMBL	tr\|B9RB89\|B9RB89_RICCO	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF50810.1}
TAIR10	AT1G28440.1	HAESA-like 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	120104042	120107518	-
GWHAAZE00000001	mRNA	120104042	120107518	-
GWHAAZE00000001	exon	120104923	120107518	-
GWHAAZE00000001	exon	120104042	120104627	-
GWHAAZE00000001	CDS	120104923	120107518	-
GWHAAZE00000001	CDS	120104236	120104627	-
GWHAAZE00000001	three_prime_UTR	120104042	120104235	-

Transcript Sequence
>GWHTAAZE004647 ATGCTGCTTCTACTACTACTAGTGCTACTCATCTCTTCACCTCTCATCACTTTCTCTCTTAACCAAGAAGGCCTCTACCTCCAACAAATCAAGCTCACCTTCGACGACCCTGACGGCGTTTTCTCAAACTGGGACTACCGTGATTCCACCCCCTGCAACTGGCGCGGCATCTCCTGCATTCCCTCAACTAATTCCGTTAACTCTGTTAACCTCCCAAGCTCCAACATTTTCGGCCCTTTTCCCTCACTTCTCTGTAACCTTCCTTCTCTCACCTCCCTCTCTCTCTCTAACAACTCCATTAACTCAACCCTCCCCCTCGATCTCTCCACGTGTCGTAATCTCGAGTACCTTGACCTTTCTCAAAACTTACTCACCGGTCCCCTTCCCTACACTCTATCAGACCTGCCCAATCTCACGTACCTCGATTTGACCGGGAATAATTTCTCCGGCTATATTCCCTCTAGTTTTGGTACTTTCCGCCAGCTCCAAGTTCTTTCATTAGTCGAAAACCTAATCGACGGCAAAATTCCGGCTGTGCTCGGTAACATTACTACACTCAAACACTTGAATTTATCTTACAACCCCTTTTTCCCCGGTCGGATCCCGCCGGAGCTCGGTAACCTCACGAACCTCGAGGTTTTGTGGCTCACCGACTGTAATTTGATTGGCGAGATTCCTCACTCACTCGGTCGACTCACAAGGCTTCTTGATCTCGATTTGGCTCTCAATAATCTTGTGGGTTCAATTCCCATATCCGTTACGGAGTTATCGAGTGTAGTGCAGATTGAACTCTACAACAACTCGTTAACCGGGGCTTTACCGGTTGTGGGTTGGTCTAACATGACGTCATTACGGTTGCTCGATGCTTCAATGAATCAATTGAGTGGAACTATTCCAGACGAGTTGTGTGAGTTGCCACTCGAATCTTTAAATCTGTATGAGAATCAATTTGAGGGGAGCTTGCCTGTAAGTATTGCTAATTCACTGAATTTATATGAATTGAGATTGTTTGGTAACCGCCTCACTGGAGAGTTACCGAAAGATCTTGGAAAAAATTCACCCTTGTTATGGATAGATGTGTCTAGTAATCAATTTTCCGGCGAAATTCCGGCGAGTTTGTGTGATAAAGGTGTTCTAGAGGAGTTTCTGTTGGTTTACAACTCTTTCTCCGGTTCAATCCCGGCGAAGTTGAGTGAATGTGAAAGTTTAACCCGTGTTAGGTTGGGATATAATAACTTCTCTGGCGAAGTCCCCGCCGGATTTTGGGGCCTTCCACATGTGTCATTGCTTGAGCTTGTGGGGAATTCGTTTTCAGGAGAAATAGGAAAAACTATTGCCGGAGCTGCAAATTTGTCGGCTCTGATTCTGTCTAAGAATAGGTTTTCGGGTAATATTCCAGAAGAACTTGGGTGGTTGGATAATTTGGTGGAATTTTCTGGTAGTGTTAACCAGTTTACCGGCTCTTTGCCAGCAAGTATAGTGAATCTTGGGCAGTTGGGTAGGCTTGATCTTCATAGTAATGAGTTATCTGGTGAGCTTCCAAGTGGAATTTACTCTTTGAAGAAGCTAAATGAGCTAAATCTTGCGGATAACGAATTTTCTGGGAACATTCCTGAGGAAATTGGGAGTATGTTTGTACTAAATTATCTTGATTTATCAGGAAATCGGTTTAAAGGGAAAATTCCACTTGGTTTACAGAATTTGAAGCTTAATCAGTTCAATGTGTCGAATAATCGCCTTTCGGGTGATATTCCACCATTATATGCTACGGATATATATAAGAACAGCTTTATTGGTAATCCTGGACTGTGTGGTGATATAGATGGCTTGTGTGATGGTAGAGCTGAAGCTAAGAACTTAGTTTATGTCTGGTTGTTGAGGTCAATCTTTATGCTTGCTGGGTTTGTGTTTATTGTGGGTCTTGTTTGGTTCTATTGGAAGTACAGGAGTTTCAAGAAGGCCGAAAGTGTTATTGAAAAATCGAAATGGACATTGATGTCTTTTCACAAATTGGGATTTAGCGAATTCGAGATATTGGATTCCCTTGATGAAGATAATGTGATTGGAACTGGCTCTTCTGGGAAAGTTTATAAGGTCATTCTGAGCAATGGTGAGGCCGTTGCAGTGAAAAAGCTTTGGGGAAGTTCAAAAATGGCCGAAAATGATGGTGATGTTGAAAAAGGCCAAGTTAAAGATGATGGGTTTAAAGCAGAGGTTGAGACATTGGGTAAGATTAGGCATAAGAACATTCTGAGGCTATGGTGTTGCTGTACCACAAAGGATTCCAAGCTTTTGGTCTATGAATACATGCCTAATGGTAGCTTGGGTGATTTGCTTCATAGTAAGAAAAGTGGCTTGTTGGATTGGCCGACGAGGTACAAGATAGCGTTAGATGCTGCCGAGGGTCTTTCTTATTTGCACCATGATTGTGTTCCTTCGATTGTACATAGAGATGTGAAGTCAAATAATATCTTGTTGGATGGGGATTTTGGAGCTCGAGTGGCAGATTTTGGAGTGGCCAAGGCGGTTGATGAAATCGGGAAAGGGACTAAATCCATGTCTGTGATCGCGGGTTCTTGTGGTTACATTGCACCAGAATATGCATACACGCTTCGGGTGAATGAGAAGAGTGATATATACAGCTTTGGCGTAGTTATCCTTGAATTGGTCACAGGGAGACTCCCAGTTGACCCAGAGTTTGGTGAAAAGGACCTGGTTAGATGGGTTTGTGGCACTTTGGACCAGAAAGGCATAGACCATGTACTAGACCCGAAACTGGATTTGTGTTTTAAAGAAGAGATTTGCAAAGTACTAAACATTGGGCTACTCTGCACTAGTCCTCTCCCCCTCAACCGCCCCTCAATGAGAAGGGTAGTTAAAATGCTGCAAGAGATAGGGTGCGAAAACCAGCTGAAGATTGCCAACAAAGATGGTATATTCTCCCCTTATTACTATGAAGACGCCTCAGATCAAGGAAGTGTAGCTTGATAAAGTAATTTTATACAAAATCTTCACAATAAAGGAAGGTGAATTAATTAATGAGGTAACTTATCAATGCTTCTCTCCAACTTATTAGAGAGAGAGTAATTGGGATGTGGAGGGATAGTTGATGATTGTAAATTGTAAATTTATTGACAATCAAAATTTTCCGCTATCAAGATTTAAAGGCTTACCTACATCAA

Network for GWHGAAZE004641

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	21	59	3.30E-10
PF13855.7	LRR_8	88	148	4.80E-10
PF00560.34	LRR_1	186	208	0.26
PF00560.34	LRR_1	210	231	0.92
PF00069.26	Pkinase	684	900	4.40E-42

Protein Sequence

>GWHPAAZE004644
MLLLLLLVLLISSPLITFSLNQEGLYLQQIKLTFDDPDGVFSNWDYRDSTPCNWRGISCIPSTNSVNSVNLPSSNIFGPFPSLLCNLPSLTSLSLSNNSINSTLPLDLSTCRNLEYLDLSQNLLTGPLPYTLSDLPNLTYLDLTGNNFSGYIPSSFGTFRQLQVLSLVENLIDGKIPAVLGNITTLKHLNLSYNPFFPGRIPPELGNLTNLEVLWLTDCNLIGEIPHSLGRLTRLLDLDLALNNLVGSIPISVTELSSVVQIELYNNSLTGALPVVGWSNMTSLRLLDASMNQLSGTIPDELCELPLESLNLYENQFEGSLPVSIANSLNLYELRLFGNRLTGELPKDLGKNSPLLWIDVSSNQFSGEIPASLCDKGVLEEFLLVYNSFSGSIPAKLSECESLTRVRLGYNNFSGEVPAGFWGLPHVSLLELVGNSFSGEIGKTIAGAANLSALILSKNRFSGNIPEELGWLDNLVEFSGSVNQFTGSLPASIVNLGQLGRLDLHSNELSGELPSGIYSLKKLNELNLADNEFSGNIPEEIGSMFVLNYLDLSGNRFKGKIPLGLQNLKLNQFNVSNNRLSGDIPPLYATDIYKNSFIGNPGLCGDIDGLCDGRAEAKNLVYVWLLRSIFMLAGFVFIVGLVWFYWKYRSFKKAESVIEKSKWTLMSFHKLGFSEFEILDSLDEDNVIGTGSSGKVYKVILSNGEAVAVKKLWGSSKMAENDGDVEKGQVKDDGFKAEVETLGKIRHKNILRLWCCCTTKDSKLLVYEYMPNGSLGDLLHSKKSGLLDWPTRYKIALDAAEGLSYLHHDCVPSIVHRDVKSNNILLDGDFGARVADFGVAKAVDEIGKGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRLPVDPEFGEKDLVRWVCGTLDQKGIDHVLDPKLDLCFKEEICKVLNIGLLCTSPLPLNRPSMRRVVKMLQEIGCENQLKIANKDGIFSPYYYEDASDQGSVA

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.280
	SRR3591706	second leaf	2.566
	SRR3591707	mature leaf	0.454
	SRR3591708	Shoot apex	6.316
	SRR3591709	Stem	5.774
	SRR3591710	White floral bud	5.491
	SRR3591711	White flower	3.310
	SRR3591712	Green floral bud	3.096
	SRR3591713	Yellow flower	1.421
SRP173429	SRR8316895	Juvenile bud stage	1.605
	SRR8316896	Juvenile bud stage	1.304
	SRR8316897	Juvenile bud stage	0.464
	SRR8316894	Third green stage	1.291
	SRR8316900	Third green stage	4.878
	SRR8316901	Third green stage	4.481
	SRR8316898	Complete white stage	9.771
	SRR8316899	Complete white stage	6.808
	SRR8316903	Complete white stage	18.467
	SRR8316902	Silver flowering stage	3.016
	SRR8316904	Silver flowering stage	7.459
	SRR8316905	Silver flowering stage	3.709
	SRR8316906	Gold flowering stage	7.461
	SRR8316907	Gold flowering stage	5.536
	SRR8316908	Gold flowering stage	5.196
SRP132670	SRR6706286	Control	4.653
	SRR6706287	Light intensity 50%	5.318
	SRR6706288	Light intensity 20%	4.098
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.499
	CNS0095593	Slightly white alabastrum(diploid) 2	3.030
	CNS0095594	Slightly white alabastrum(diploid) 3	1.626
	CNS0095595	Whole white alabastrum(diploid) 2	2.283
	CNS0095596	Whole white alabastrum(diploid) 3	2.686
	CNS0095597	Whole white alabastrum(diploid) 4	2.963
	CNS0095598	Silvery flower (diploied) 1	3.285
	CNS0095599	Silvery flower (diploied) 2	2.454
	CNS0095600	Silvery flower (diploied) 3	7.831
	CNS0095601	Golden flower (diploid) 1	1.375
	CNS0095602	Golden flower (diploid) 2	3.584
	CNS0095603	Golden flower (diploid) 3	3.808
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.980
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.169
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.266
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.615
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.172
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.746
	CNS0095610	Silvery flower (tetraploid) 1	15.765
	CNS0095611	Silvery flower (tetraploid) 2	10.915
	CNS0095612	Silvery flower (tetraploid) 3	3.027
	CNS0095613	Golden flower (tetraploid) 1	1.456
	CNS0095614	Golden flower (tetraploid) 2	9.127
	CNS0095615	Golden flower (tetraploid) 3	2.299
CRA001975	CRR073297	Stem 1	3.694
	CRR073298	Stem 2	4.321
	CRR073299	Stem 3	3.069
	CRR073300	Leaf 1	8.759
	CRR073301	Leaf 2	6.082
	CRR073302	Leaf 3	4.272
	CRR073303	Juvenile bud 1	8.291
	CRR073304	Juvenile bud 2	22.722
	CRR073305	Juvenile bud 3	8.639
	CRR073306	Third green 1	11.057
	CRR073307	Third green 2	10.293
	CRR073308	Third green 3	12.046
	CRR073309	Second white 1	2.640
	CRR073310	Second white 2	1.954
	CRR073311	Second white 3	1.569
	CRR073312	Silver flowering 1	0.757
	CRR073313	Silver flowering 2	0.713
	CRR073314	Silver flowering 3	1.156
	CRR073315	Gold flowering 1	0.402
	CRR073316	Gold flowering 2	0.526
	CRR073317	Gold flowering 3	0.635
	CRR073318	Tawny withering 1	9.287
	CRR073319	Tawny withering 2	4.751
	CRR073320	Tawny withering 3	10.568