Gene detail

Detail information of GWHGAAZE004566

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI30700.3	0	unnamed protein product [Vitis vinifera]
Swissprot	tr\|C0LGK9\|Y2242_ARATH	4E-90	Probable LRR receptor-like serine/threonine-protein kinase At2g24230 (Precursor)
trEMBL	tr\|F6HMA6\|F6HMA6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55694.1}
TAIR10	AT5G45800.1	6E-130	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	118950250	118955168	+
GWHAAZE00000001	mRNA	118950250	118955168	+
GWHAAZE00000001	exon	118950250	118950671	+
GWHAAZE00000001	exon	118951236	118951660	+
GWHAAZE00000001	exon	118954540	118955168	+
GWHAAZE00000001	CDS	118950250	118950671	+
GWHAAZE00000001	CDS	118951236	118951660	+
GWHAAZE00000001	CDS	118954540	118955168	+

Transcript Sequence
>GWHTAAZE004572 ATGGAGGCTATACTCAAATTCATGATAGTCATCTCACTTTTTGCTTTTGTAGAATCTACCTGCACCAACAACAATACAGACCAAAAATTCCTCTTCAAAGCCTTCAGCTCTGTCTCTAACTTCAACACCTCTTGGTTCAATTCTTCTCCTTATGATTCTTCCAACTGCACAAATATTACCCAAATTAACCTCTCTTCAAAAAATCTAACTGGTGCTCTCTCTTGGCACTTTCTCACAAATTTGTCTCACCTCCACACCATTGATCTCTCCAACAACTCCCTAACTGGCTCTATCCCGCCCCTGTTTTGGTCCATCCCTACCCTGGTTAAGGTTAACCTCTCCAAGAACCGGCTTGGTGGCACCCTTGGATCCGAACCAGCTTCGGTTTCATCAATCCAAGCCCTCAATTTGTCCAAGAACAGAAAGAGAAGAATGGCTAGATTAAACAAATGGGCAATATCTAAACCAACAATTTATCATCATCATCCATCATTCAAGATGGAGAAATCTGGGCCGTTCAATTTCGAGACCGAATCGGGGTCATCATGGGTAGCTGATATCAAGGAGCCGTCATCAGCACCGGTGGTTATGTTCGAGAAGCCATTGATGAATCTTACTTTCAAGGACCTGATTGCTGCCACGTCACACTTTGGGAAGGACTCTTTGTTGGCGGAGGGGAGGTGTGGCCCCGTTTATAGGGCTGTGCTGCCGGGAGAGCTCCACGTGGCAATCAAGGTACTGGAGCAGGCGAGAGACGTTGATCATGATGACTGTGTGGGTTTGTTTGAAGACTTGTCCAGGCTTAAGCACCCCAACCTATTGCCCATTTGTGGCTACTGCATTGCAGGCAAAGAGAAGCTAGTATTATGCGAGTTTATGGCCACCGGTGACCTCCACAGATGGCTTCACGAACTCCCAACTGGAGAGCCCAACGTTGAGGATTGGACCACTGACACGTGGCAGCATCCCAGTGACGGAGAGAATCCCCTCAACTTATCTTCACCGAACAAAGTAGAGTGGCGCACGCGCCACCGCATTGCGGTGGGCATTGCCCGTGGGCTCGCCTACCTCCACCACGCCCGATCCAAACCGGTGGTCCACGGCCACCTAGTCCCCTCCAACATCCTACTAACCGACAGCCTCGAGCCCCGCATTGCCGATTTCTGGGTGAGCCAAGACCGAGTTGTGGGGTCCGCCGAGACTGACGTGTACTGCTTCGGGGTGGTGGTTTTTGAGTTGTTGACGGGGCAACCAAGCTCGGATGAGATGGTGGGGCGCGTGAGGAGGCTGGTTAGGGAGGCGCGTGGTGTCGACGCGCTTGACTCGAGGCTGAGACTAGGTGGTGACTCGGTGAGTGAGATGGTGGAGGGGTTGCGAGTTGGGTACTTGTGTACGGCGGAGATACCTGGGAAGAGACCAACTATGCAGCAGGTTTTGGGTATGTTAAAAGACATACATCCCATGACAATGGAGTGA

Network for GWHGAAZE004566

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	58	118	1.30E-06
PF07714.18	PK_Tyr_Ser-Thr	221	393	5.90E-20

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VII-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.792
	SRR3591706	second leaf	2.982
	SRR3591707	mature leaf	1.471
	SRR3591708	Shoot apex	6.923
	SRR3591709	Stem	0.970
	SRR3591710	White floral bud	6.949
	SRR3591711	White flower	6.433
	SRR3591712	Green floral bud	3.261
	SRR3591713	Yellow flower	2.844
SRP173429	SRR8316895	Juvenile bud stage	6.351
	SRR8316896	Juvenile bud stage	4.600
	SRR8316897	Juvenile bud stage	2.461
	SRR8316894	Third green stage	0.819
	SRR8316900	Third green stage	1.229
	SRR8316901	Third green stage	2.411
	SRR8316898	Complete white stage	2.455
	SRR8316899	Complete white stage	4.492
	SRR8316903	Complete white stage	7.698
	SRR8316902	Silver flowering stage	12.232
	SRR8316904	Silver flowering stage	6.130
	SRR8316905	Silver flowering stage	1.513
	SRR8316906	Gold flowering stage	9.018
	SRR8316907	Gold flowering stage	12.632
	SRR8316908	Gold flowering stage	18.240
SRP132670	SRR6706286	Control	1.929
	SRR6706287	Light intensity 50%	2.549
	SRR6706288	Light intensity 20%	2.362
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.967
	CNS0095593	Slightly white alabastrum(diploid) 2	9.293
	CNS0095594	Slightly white alabastrum(diploid) 3	16.213
	CNS0095595	Whole white alabastrum(diploid) 2	18.490
	CNS0095596	Whole white alabastrum(diploid) 3	0.517
	CNS0095597	Whole white alabastrum(diploid) 4	16.443
	CNS0095598	Silvery flower (diploied) 1	21.281
	CNS0095599	Silvery flower (diploied) 2	47.682
	CNS0095600	Silvery flower (diploied) 3	18.452
	CNS0095601	Golden flower (diploid) 1	27.829
	CNS0095602	Golden flower (diploid) 2	32.797
	CNS0095603	Golden flower (diploid) 3	30.021
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.439
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.885
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.893
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.882
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.423
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.721
	CNS0095610	Silvery flower (tetraploid) 1	8.099
	CNS0095611	Silvery flower (tetraploid) 2	5.333
	CNS0095612	Silvery flower (tetraploid) 3	5.658
	CNS0095613	Golden flower (tetraploid) 1	8.183
	CNS0095614	Golden flower (tetraploid) 2	6.245
	CNS0095615	Golden flower (tetraploid) 3	7.873
CRA001975	CRR073297	Stem 1	3.157
	CRR073298	Stem 2	2.514
	CRR073299	Stem 3	3.135
	CRR073300	Leaf 1	2.997
	CRR073301	Leaf 2	3.933
	CRR073302	Leaf 3	0.774
	CRR073303	Juvenile bud 1	1.706
	CRR073304	Juvenile bud 2	0.528
	CRR073305	Juvenile bud 3	3.302
	CRR073306	Third green 1	2.281
	CRR073307	Third green 2	1.678
	CRR073308	Third green 3	2.223
	CRR073309	Second white 1	3.649
	CRR073310	Second white 2	3.900
	CRR073311	Second white 3	5.747
	CRR073312	Silver flowering 1	8.329
	CRR073313	Silver flowering 2	9.968
	CRR073314	Silver flowering 3	9.985
	CRR073315	Gold flowering 1	0.505
	CRR073316	Gold flowering 2	4.598
	CRR073317	Gold flowering 3	4.786
	CRR073318	Tawny withering 1	2.494
	CRR073319	Tawny withering 2	8.814
	CRR073320	Tawny withering 3	1.813