Detail information of GWHGAAZE004547


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009786355.13.1456E-179PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like [Nicotiana sylvestris]
Swissprottr|P27493|CB22_TOBAC4E-180Chlorophyll a-b binding protein 21, chloroplastic (Precursor)
trEMBLtr|O64442|O64442_NICSY1E-179Light harvesting chlorophyll a/b-binding protein {ECO:0000313|EMBL:BAA25388.1} (Precursor)
TAIR10AT1G29930.11E-134chlorophyll A/B binding protein 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene118607032118607829-
GWHAAZE00000001mRNA118607032118607829-
GWHAAZE00000001exon118607032118607829-
GWHAAZE00000001CDS118607032118607829-
Transcript Sequence

Network for GWHGAAZE004547

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00504.22Chloroa_b-bind662311.20E-50
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K08912LHCB1 Metabolic pathways map01100
Photosynthesis - antenna proteinsmap00196

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf41.697
SRR3591706second leaf1794.828
SRR3591707mature leaf552.447
SRR3591708Shoot apex755.745
SRR3591709Stem209.297
SRR3591710White floral bud1.466
SRR3591711White flower4.231
SRR3591712Green floral bud1.321
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.014
SRR8316897Juvenile bud stage 0.025
SRR8316894Third green stage 0.000
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.000
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.000
SRR6706287Light intensity 50%0.003
SRR6706288Light intensity 20%0.000
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.147
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.033
CNS0095595Whole white alabastrum(diploid) 20.013
CNS0095596Whole white alabastrum(diploid) 30.008
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.056
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.104
CNS0095602Golden flower (diploid) 20.012
CNS0095603Golden flower (diploid) 30.054
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.018
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.010
CNS0095610Silvery flower (tetraploid) 10.010
CNS0095611Silvery flower (tetraploid) 20.022
CNS0095612Silvery flower (tetraploid) 30.010
CNS0095613Golden flower (tetraploid) 10.017
CNS0095614Golden flower (tetraploid) 20.026
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.000
CRR073298Stem 20.019
CRR073299Stem 30.037
CRR073300Leaf 10.000
CRR073301Leaf 20.014
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.005
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.085
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.042
CRR073316Gold flowering 20.078
CRR073317Gold flowering 31.043
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000