Gene detail

Detail information of GWHGAAZE004534

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002272319.3	0	PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Vitis vinifera]
COG	YP_004775215.1	2E-59	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9FL28\|FLS2_ARATH	0	LRR receptor-like serine/threonine-protein kinase FLS2 (Precursor)
trEMBL	tr\|V9Q689\|V9Q689_VITVI	0	Flagelling sensing 2 {ECO:0000313\|EMBL:AHC08662.1}
TAIR10	AT5G46330.1	7E-168	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	118457134	118459203	-
GWHAAZE00000001	mRNA	118457134	118459203	-
GWHAAZE00000001	exon	118457134	118458792	-
GWHAAZE00000001	exon	118458913	118459203	-
GWHAAZE00000001	CDS	118458913	118459203	-
GWHAAZE00000001	CDS	118457134	118458792	-

Transcript Sequence
>GWHTAAZE004540 ATGGTGTTTCAAAGTACATGCTTTACTGTACTTGTACTCTGTTCTATTCTACTTGTTTCATTTGCACAACTGAACAATGAAGTTGAAACTGAGGCCTTGAAAGCATTCAAGAACTCGATCAGCAACGACCCGTTTGGCGCGCTGGCGGACTGGACTGATTCGCAGCCTCAATGCAACTGGACTGGAATTATATGCGCTGCTTCATCCAAACGCATCATTTCCATTTCTCTGGTGGAAAAGCAGTTCCAAGGCTCCATATCTCCATTCCTCCGAAACCTTCCCAGCCTCCAGCTAGGAAAACTTCAAAACCTCCAGTCCATAGACTTGGGAACCAATTTCCTCAACGGGAAAATCCCCGAGAGTCTCTGTAACTGCACTGCATTGTTAGCCCTCGGCCTAGATACCAACAATTTTACAGGACCAATCCCATTGAACATCGGTAACTTGGTTAATCCTAAACTTTTTATAGCTCAAGAAAATGACTTGACCGGTTCGATCCCTCCTTCCATTGGTGGGTTGGAAGCTATTCAAATAATCAACCCGAGCCTAAACAGGTTGACTGGACTAATACCTCGAGAGATTGGGAATTTATCAAACCTGGAAAATCTTCAGTTGCTGGATAATTTTCTTACTGGAAAAATCCCACCTGAGCTAAGCCGCTGTAAAAAAATTGTTTCTTTAAACATATACCGCAATCAGCTCACTGGAGCCATTCCACCTGAGCTTGGAAACTTGGCTAGCTTACAAATATTGCGTTTATACGACAATAAGCTCAATTCTACAATTCCACTGTCATTGTTTCGATTGAAATCATTAACAAATTTGGGACTTTCGGGGAACGAGTTAATCGGTAAAATACCTTCCGAGATTGGTTCTTTAAAATCCTTACAAGTACTAACTCTCCACTCGAATTCTTTCACCAGCGGGATCCCTCTGTCCATAACAAACTTGACCAATTTAACGTACTTGTCCCTCGGCTTCAATTTCCTCACGGGGTCAATACCGAAAAATATTGGGTCACTATATAATTTAAAGAACTTGACCCTGAATAGCAATCTTCTTGAGGGACCCGTTCCTCTTAGTATCACCAATTGTACAAGCCTTCTTGTTATAAGTTTGGCCTACAATAGACTAACAGGGAAAGTTCCAGCAGGACTTGGGCAGTTGTCAAATCTTACATTTCTATCCATCGGAAAGAATAAAATGTCCGGCGATATACCTGATGACCTCTTCAATTGCTTGAGTCTCAATAGGCTAGATTTGACACGGAACAATTTGAGCGGATTGTTGAAACTGAGTATTGGGAAGCTCTCAAATCTTCAGTATCTGCAACTTCATTCAAATTCGTTAGTCAGGTCAATCCCGCAAGAGATTGGCAATATAAGTCGATTGAATACATTATTTCTCGATGGAAATCAATTTTCGGGGCTAGTGCCTCATGAAATGTCGAAACTTACCTTTCTCCAAGGCCTTTCGCTGAGTGACAATTTGCTGGAAGGAGCAATTCCTGAGGAAATTTTTGAGCTGAAGCAGTTGACCGATCTTCGCCTGCAGAATAACAAGTTTGTCAGTTCCATTCCTAATGCTGTTTCGAAACTGGAGCTGCTTTCGTACTTGGACCTCAGTGGGAACATGTTCAATGGTACAATCCCGAAAAGTAAGACAAAGCTGAACCGAATTACAACTTTGGACCTCTCACACAACCGTCTAACGGGACCCATTCCAGGGTCGGTGATCACAAGTATGAGAAATATGCAGATATATCTGAAGCTTTCTTACAATTATCTAGAAGGAACAATTCCAGATGAGATTGGCAATCTAGAAATGATACAAGCCATTGATATCTCAAACAATAATCTGTCGGGAAGGATCCCAGCTACACTTGAAGGCTGCAGAAATTTGTTTGATCTTGATTTATCAAGCAATGAGCTTTCGGGTCAAATTCCATAA

Network for GWHGAAZE004534

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	29	65	5.70E-10
PF00560.34	LRR_1	103	125	0.66
PF13855.7	LRR_8	415	474	2.70E-06
PF13855.7	LRR_8	511	570	2.80E-07
PF13855.7	LRR_8	589	644	7.20E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13420	FLS2	MAPK signaling pathway - plant	map04016
K13420	FLS2	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.219
	SRR3591706	second leaf	1.862
	SRR3591707	mature leaf	3.033
	SRR3591708	Shoot apex	4.770
	SRR3591709	Stem	4.787
	SRR3591710	White floral bud	3.007
	SRR3591711	White flower	4.787
	SRR3591712	Green floral bud	3.715
	SRR3591713	Yellow flower	2.300
SRP173429	SRR8316895	Juvenile bud stage	2.331
	SRR8316896	Juvenile bud stage	3.425
	SRR8316897	Juvenile bud stage	2.321
	SRR8316894	Third green stage	1.481
	SRR8316900	Third green stage	3.646
	SRR8316901	Third green stage	3.185
	SRR8316898	Complete white stage	0.370
	SRR8316899	Complete white stage	3.360
	SRR8316903	Complete white stage	1.223
	SRR8316902	Silver flowering stage	0.836
	SRR8316904	Silver flowering stage	1.047
	SRR8316905	Silver flowering stage	0.368
	SRR8316906	Gold flowering stage	1.924
	SRR8316907	Gold flowering stage	1.861
	SRR8316908	Gold flowering stage	2.417
SRP132670	SRR6706286	Control	1.548
	SRR6706287	Light intensity 50%	1.608
	SRR6706288	Light intensity 20%	1.404
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.264
	CNS0095593	Slightly white alabastrum(diploid) 2	3.647
	CNS0095594	Slightly white alabastrum(diploid) 3	3.230
	CNS0095595	Whole white alabastrum(diploid) 2	3.127
	CNS0095596	Whole white alabastrum(diploid) 3	2.335
	CNS0095597	Whole white alabastrum(diploid) 4	2.349
	CNS0095598	Silvery flower (diploied) 1	3.472
	CNS0095599	Silvery flower (diploied) 2	3.550
	CNS0095600	Silvery flower (diploied) 3	3.988
	CNS0095601	Golden flower (diploid) 1	4.899
	CNS0095602	Golden flower (diploid) 2	4.955
	CNS0095603	Golden flower (diploid) 3	4.721
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.287
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.139
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.539
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.935
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.695
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.400
	CNS0095610	Silvery flower (tetraploid) 1	6.783
	CNS0095611	Silvery flower (tetraploid) 2	5.566
	CNS0095612	Silvery flower (tetraploid) 3	3.862
	CNS0095613	Golden flower (tetraploid) 1	3.743
	CNS0095614	Golden flower (tetraploid) 2	5.225
	CNS0095615	Golden flower (tetraploid) 3	2.410
CRA001975	CRR073297	Stem 1	2.156
	CRR073298	Stem 2	2.074
	CRR073299	Stem 3	0.277
	CRR073300	Leaf 1	3.214
	CRR073301	Leaf 2	2.763
	CRR073302	Leaf 3	1.099
	CRR073303	Juvenile bud 1	1.117
	CRR073304	Juvenile bud 2	0.274
	CRR073305	Juvenile bud 3	0.920
	CRR073306	Third green 1	0.004
	CRR073307	Third green 2	0.098
	CRR073308	Third green 3	0.117
	CRR073309	Second white 1	0.112
	CRR073310	Second white 2	0.194
	CRR073311	Second white 3	0.080
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.856
	CRR073316	Gold flowering 2	0.929
	CRR073317	Gold flowering 3	0.130
	CRR073318	Tawny withering 1	0.888
	CRR073319	Tawny withering 2	0.977
	CRR073320	Tawny withering 3	0.648